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PREV NEXT | FRAMES NO FRAMES |
org.jmol.* |
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org.jmol.adapter.readers.cifpdb.CifReader | ||
---|---|---|
private static final byte |
ADP_TYPE |
46 |
private static final byte |
ALT_ID |
15 |
private static final byte |
ANISO_B11 |
34 |
private static final byte |
ANISO_B12 |
37 |
private static final byte |
ANISO_B13 |
38 |
private static final byte |
ANISO_B22 |
35 |
private static final byte |
ANISO_B23 |
39 |
private static final byte |
ANISO_B33 |
36 |
private static final byte |
ANISO_Beta_11 |
40 |
private static final byte |
ANISO_Beta_12 |
43 |
private static final byte |
ANISO_Beta_13 |
44 |
private static final byte |
ANISO_Beta_22 |
41 |
private static final byte |
ANISO_Beta_23 |
45 |
private static final byte |
ANISO_Beta_33 |
42 |
private static final byte |
ANISO_LABEL |
20 |
private static final byte |
ANISO_MMCIF_U11 |
27 |
private static final byte |
ANISO_MMCIF_U12 |
30 |
private static final byte |
ANISO_MMCIF_U13 |
31 |
private static final byte |
ANISO_MMCIF_U22 |
28 |
private static final byte |
ANISO_MMCIF_U23 |
32 |
private static final byte |
ANISO_MMCIF_U33 |
29 |
private static final byte |
ANISO_U11 |
21 |
private static final byte |
ANISO_U12 |
24 |
private static final byte |
ANISO_U13 |
25 |
private static final byte |
ANISO_U22 |
22 |
private static final byte |
ANISO_U23 |
26 |
private static final byte |
ANISO_U33 |
23 |
private static final byte |
ASYM_ID |
12 |
private static final byte |
ATOM_TYPE_OXIDATION_NUMBER |
1 |
private static final byte |
ATOM_TYPE_SYMBOL |
0 |
private static final byte |
AUTH_ATOM |
2 |
private static final byte |
B_ISO |
10 |
private static final byte |
BEG_ASYM_ID |
1 |
private static final byte |
BEG_INS_CODE |
3 |
private static final byte |
BEG_SEQ_ID |
2 |
private static final byte |
CARTN_X |
6 |
private static final byte |
CARTN_Y |
7 |
private static final byte |
CARTN_Z |
8 |
private static final byte |
CHEM_COMP_ID |
0 |
private static final byte |
CHEM_COMP_NAME |
1 |
private static final byte |
COMP_ID |
11 |
private static final byte |
CONF_TYPE_ID |
0 |
private static final byte |
DISORDER_GROUP |
19 |
private static final byte |
DUMMY_ATOM |
18 |
private static final byte |
END_ASYM_ID |
4 |
private static final byte |
END_INS_CODE |
6 |
private static final byte |
END_SEQ_ID |
5 |
private static final byte |
FRACT_X |
3 |
private static final byte |
FRACT_Y |
4 |
private static final byte |
FRACT_Z |
5 |
private static final byte |
GEOM_BOND_ATOM_SITE_LABEL_1 |
0 |
private static final byte |
GEOM_BOND_ATOM_SITE_LABEL_2 |
1 |
private static final byte |
GEOM_BOND_SITE_SYMMETRY_2 |
2 |
private static final byte |
GROUP_PDB |
16 |
private static final byte |
INS_CODE |
14 |
private static final byte |
LABEL |
1 |
private static final byte |
MODEL_NO |
17 |
private static final byte |
NONE |
-1 |
private static final byte |
NONPOLY_COMP_ID |
2 |
private static final byte |
NONPOLY_ENTITY_ID |
0 |
private static final byte |
NONPOLY_NAME |
1 |
private static final byte |
OCCUPANCY |
9 |
private static final byte |
SEQ_ID |
13 |
private static final byte |
SITE_ASYM_ID |
2 |
private static final byte |
SITE_COMP_ID |
1 |
private static final byte |
SITE_ID |
0 |
private static final byte |
SITE_INS_CODE |
4 |
private static final byte |
SITE_SEQ_ID |
3 |
private static final byte |
SYM_EQUIV_XYZ |
1 |
private static final byte |
SYMOP_XYZ |
0 |
private static final byte |
TYPE_SYMBOL |
0 |
private static final byte |
U_ISO_OR_EQUIV |
33 |
org.jmol.adapter.readers.cifpdb.PdbReader | ||
---|---|---|
private static final java.lang.String |
lineOptions |
"ATOM HETATM MODEL CONECT HELIX SHEET TURN HET HETNAM ANISOU SITE CRYST1 SCALE1 SCALE2 SCALE3 EXPDTA FORMUL REMARK HEADER COMPND " |
org.jmol.adapter.readers.molxyz.MolReader | ||
---|---|---|
private static final java.lang.String |
isotopeMap0 |
"H1 H2 " |
private static final java.lang.String |
isotopeMap1 |
"D T " |
org.jmol.adapter.readers.more.CsfReader | ||
---|---|---|
static final byte |
anum |
2 |
static final byte |
bfxn_ang |
6 |
static final byte |
bondType |
1 |
static final byte |
chrg |
3 |
static final byte |
coef_indices |
5 |
static final byte |
contractions |
8 |
static final byte |
eig_val |
1 |
static final byte |
eig_vec |
3 |
static final byte |
eig_vec_compressed |
4 |
static final byte |
gto_exp |
9 |
static final byte |
ID |
-1 |
static final byte |
mo_occ |
2 |
static final byte |
normalMode |
1 |
static final byte |
objCls1 |
1 |
static final byte |
objCls2 |
3 |
static final byte |
objID1 |
2 |
static final byte |
objID2 |
4 |
static final byte |
pchrg |
5 |
static final byte |
shell |
10 |
static final byte |
sto_exp |
7 |
static final byte |
sym |
1 |
static final byte |
transitionDipole |
3 |
static final byte |
vibEnergy |
2 |
static final byte |
xyz_coordinates |
4 |
org.jmol.adapter.readers.more.FoldingXyzReader | ||
---|---|---|
private static final boolean |
useAutoBond |
false |
org.jmol.adapter.readers.more.GaussianReader | ||
---|---|---|
private static final int |
FREQ_FIRST_VECTOR_OFFSET |
2 |
private static final int |
STD_ORIENTATION_ATOMIC_NUMBER_OFFSET |
1 |
org.jmol.adapter.readers.more.MopacData | ||
---|---|---|
private static final float |
fourPi |
12.566370964050293f |
org.jmol.adapter.readers.more.org.jmol.adapter.readers.more.MopacDataReader | ||
---|---|---|
protected static final float |
MIN_COEF |
9.999999747378752E-5f |
org.jmol.adapter.readers.xml.XmlArgusReader | ||
---|---|---|
static final int |
ATOM |
2 |
static final int |
BOND |
3 |
static final int |
MOLECULE |
1 |
static final int |
UNSET |
0 |
org.jmol.adapter.readers.xml.XmlCmlReader | ||
---|---|---|
protected final int |
CML |
1 |
protected final int |
CRYSTAL |
2 |
protected final int |
CRYSTAL_SCALAR |
3 |
protected final int |
CRYSTAL_SYMMETRY |
4 |
protected final int |
CRYSTAL_SYMMETRY_TRANSFORM3 |
5 |
protected final int |
LATTICE_VECTOR |
18 |
protected final int |
MODULE |
15 |
protected final int |
MOLECULE |
6 |
protected final int |
MOLECULE_ATOM |
8 |
protected final int |
MOLECULE_ATOM_ARRAY |
7 |
protected final int |
MOLECULE_ATOM_BUILTIN |
13 |
protected final int |
MOLECULE_ATOM_SCALAR |
9 |
protected final int |
MOLECULE_BOND |
11 |
protected final int |
MOLECULE_BOND_ARRAY |
10 |
protected final int |
MOLECULE_BOND_BUILTIN |
14 |
protected final int |
MOLECULE_FORMULA |
12 |
protected final int |
START |
0 |
protected final int |
SYMMETRY |
17 |
org.jmol.adapter.smarter.AtomSetCollection | ||
---|---|---|
static final int |
GLOBAL_FRACTCOORD |
0 |
static final int |
GLOBAL_latticeCells |
2 |
static final int |
GLOBAL_SYMMETRY |
1 |
org.jmol.adapter.smarter.AtomSetCollectionReader | ||
---|---|---|
public static final float |
ANGSTROMS_PER_BOHR |
0.529177188873291f |
org.jmol.adapter.smarter.Resolver | ||
---|---|---|
private static final java.lang.String |
classBase |
"org.jmol.adapter.readers." |
private static final java.lang.String |
CML_NAMESPACE_URI |
"http://www.xml-cml.org/schema" |
static final int |
LEADER_CHAR_MAX |
20 |
public static final int |
SPECIAL_ARGUS_DOM |
13 |
public static final int |
SPECIAL_ARGUS_XML |
8 |
public static final int |
SPECIAL_CHEM3D_DOM |
15 |
public static final int |
SPECIAL_CHEM3D_XML |
10 |
public static final int |
SPECIAL_CML_DOM |
14 |
public static final int |
SPECIAL_CML_XML |
9 |
static final int |
SPECIAL_CUBE |
7 |
static final int |
SPECIAL_FOLDINGXYZ |
6 |
static final int |
SPECIAL_JME |
0 |
static final int |
SPECIAL_MOL |
4 |
public static final int |
SPECIAL_MOLPRO_DOM |
16 |
public static final int |
SPECIAL_MOLPRO_XML |
11 |
static final int |
SPECIAL_MOPACGRAPHF |
1 |
static final int |
SPECIAL_ODYSSEY |
3 |
public static final int |
SPECIAL_ODYSSEY_DOM |
17 |
public static final int |
SPECIAL_ODYSSEY_XML |
12 |
static final int |
SPECIAL_V3000 |
2 |
static final int |
SPECIAL_XYZ |
5 |
org.jmol.adapter.smarter.SmarterJmolAdapter | ||
---|---|---|
public static final java.lang.String |
PATH_KEY |
".PATH" |
org.jmol.api.JmolAdapter | ||
---|---|---|
public static final short |
ORDER_AROMATIC |
515 |
public static final short |
ORDER_AROMATIC_DOUBLE |
514 |
public static final short |
ORDER_AROMATIC_SINGLE |
513 |
public static final short |
ORDER_COVALENT_DOUBLE |
2 |
public static final short |
ORDER_COVALENT_SINGLE |
1 |
public static final short |
ORDER_COVALENT_TRIPLE |
3 |
public static final short |
ORDER_HBOND |
2048 |
public static final short |
ORDER_PARTIAL01 |
33 |
public static final short |
ORDER_PARTIAL12 |
66 |
public static final short |
ORDER_PARTIAL23 |
97 |
public static final short |
ORDER_PARTIAL32 |
100 |
public static final short |
ORDER_STEREO_FAR |
1026 |
public static final short |
ORDER_STEREO_NEAR |
1025 |
public static final short |
ORDER_UNSPECIFIED |
7 |
public static final int |
SHELL_D_CARTESIAN |
3 |
public static final int |
SHELL_D_SPHERICAL |
4 |
public static final int |
SHELL_F_CARTESIAN |
5 |
public static final int |
SHELL_F_SPHERICAL |
6 |
public static final int |
SHELL_L |
2 |
public static final int |
SHELL_P |
1 |
public static final int |
SHELL_S |
0 |
public static final int |
SHELL_SP |
2 |
org.jmol.applet.Jmol | ||
---|---|---|
private static final boolean |
REQUIRE_PROGRESSBAR |
true |
private static final int |
SCRIPT_CHECK |
0 |
private static final int |
SCRIPT_NOWAIT |
2 |
private static final int |
SCRIPT_WAIT |
1 |
org.jmol.appletwrapper.org.jmol.appletwrapper.WrappedAppletLoader | ||
---|---|---|
private static final int |
minimumLoadSeconds |
0 |
org.jmol.atomdata.AtomData | ||
---|---|---|
public static final int |
MODE_FILL_COORDS |
1 |
public static final int |
MODE_FILL_COORDS_AND_RADII |
2 |
public static final int |
MODE_GET_ATTACHED_HYDROGENS |
3 |
org.jmol.bspt.Bspt | ||
---|---|---|
static final int |
leafCountMax |
2 |
static final int |
MAX_TREE_DEPTH |
100 |
org.jmol.export._Exporter | ||
---|---|---|
protected static final float |
degreesPerRadian |
57.295780181884766f |
org.jmol.export.image.GifEncoder | ||
---|---|---|
static final int |
BITS |
12 |
static final int |
EOF |
-1 |
static final int |
HSIZE |
5003 |
org.jmol.export.image.PngEncoder | ||
---|---|---|
public static final boolean |
ENCODE_ALPHA |
true |
public static final int |
FILTER_LAST |
2 |
public static final int |
FILTER_NONE |
0 |
public static final int |
FILTER_SUB |
1 |
public static final int |
FILTER_UP |
2 |
public static final boolean |
NO_ALPHA |
false |
org.jmol.g3d.Font3D | ||
---|---|---|
private static final int |
FONT_ALLOCATION_UNIT |
8 |
public static final int |
FONT_FACE_MONO |
2 |
public static final int |
FONT_FACE_SANS |
0 |
public static final int |
FONT_FACE_SERIF |
1 |
public static final int |
FONT_STYLE_BOLD |
1 |
public static final int |
FONT_STYLE_BOLDITALIC |
3 |
public static final int |
FONT_STYLE_ITALIC |
2 |
public static final int |
FONT_STYLE_PLAIN |
0 |
org.jmol.g3d.Graphics3D | ||
---|---|---|
private static final int |
ALPHA_SHIFT |
13 |
public static final short |
BLACK |
4 |
public static final short |
BLUE |
7 |
private static final short |
CHANGEABLE_MASK |
-32768 |
public static final short |
CYAN |
9 |
public static final byte |
ENDCAPS_FLAT |
2 |
public static final byte |
ENDCAPS_NONE |
0 |
public static final byte |
ENDCAPS_OPEN |
1 |
public static final byte |
ENDCAPS_OPENEND |
4 |
public static final byte |
ENDCAPS_SPHERICAL |
3 |
public static final short |
GOLD |
23 |
public static final short |
GRAY |
12 |
public static final short |
GREEN |
11 |
public static final short |
HOTPINK |
22 |
public static final short |
INHERIT_ALL |
0 |
private static final short |
INHERIT_COLOR |
1 |
public static final short |
LIME |
14 |
public static final short |
MAGENTA |
20 |
public static final short |
MAROON |
15 |
public static final short |
NAVY |
16 |
public static final short |
OLIVE |
17 |
public static final short |
OPAQUE_MASK |
-30721 |
public static final short |
ORANGE |
5 |
public static final short |
PINK |
6 |
public static final short |
PURPLE |
18 |
public static final short |
RED |
10 |
public static final byte |
shadeLast |
63 |
public static final byte |
shadeMax |
64 |
public static final short |
SILVER |
13 |
static final short |
SPECIAL_COLIX_MAX |
4 |
public static final short |
TEAL |
19 |
static final int |
TRANSLUCENT_50 |
8192 |
private static final int |
TRANSLUCENT_MASK |
30720 |
private static final int |
TRANSLUCENT_SCREENED |
30720 |
private static final int |
TRANSLUCENT_SHIFT |
11 |
private static final int |
TRANSPARENT |
16384 |
private static final short |
UNMASK_CHANGEABLE_TRANSLUCENT |
2047 |
static final short |
UNUSED_OPTION3 |
3 |
public static final short |
USE_PALETTE |
2 |
public static final short |
WHITE |
8 |
public static final short |
YELLOW |
21 |
org.jmol.g3d.org.jmol.g3d.Line3D | ||
---|---|---|
static final int |
VISIBILITY_CLIPPED |
1 |
static final int |
VISIBILITY_OFFSCREEN |
2 |
static final int |
VISIBILITY_UNCLIPPED |
0 |
static final int |
xGT |
4 |
static final int |
xLT |
8 |
static final int |
yGT |
1 |
static final int |
yLT |
2 |
static final int |
zGT |
16 |
static final int |
zLT |
32 |
org.jmol.g3d.org.jmol.g3d.Normix3D | ||
---|---|---|
private static final boolean |
DEBUG_FACE_VECTORS |
false |
private static final boolean |
DEBUG_WITH_SEQUENTIAL_SEARCH |
false |
static final int |
NORMIX_GEODESIC_LEVEL |
3 |
private static final boolean |
TIMINGS |
false |
org.jmol.g3d.org.jmol.g3d.Platform3D | ||
---|---|---|
static final boolean |
desireClearingThread |
false |
static final boolean |
forcePlatformAWT |
false |
org.jmol.g3d.org.jmol.g3d.Shade3D | ||
---|---|---|
static final int |
shadeLast |
63 |
static final int |
shadeMax |
64 |
private static final float |
xLightsource |
-1.0f |
private static final float |
yLightsource |
-1.0f |
private static final float |
zLightsource |
2.5f |
org.jmol.g3d.Sphere3D | ||
---|---|---|
private static final int |
maxOddSizeSphere |
49 |
private static final int |
maxSphereCache |
128 |
static final int |
maxSphereDiameter |
1000 |
static final int |
maxSphereDiameter2 |
2000 |
private static final int |
SDIM |
40 |
private static final int |
SLIM |
20 |
org.jmol.g3d.org.jmol.g3d.Triangle3D | ||
---|---|---|
private static final int |
DEFAULT |
64 |
private static final boolean |
VERIFY |
false |
org.jmol.geodesic.EnvelopeCalculation | ||
---|---|---|
public static final int |
MAX_LEVEL |
3 |
public static final float |
SURFACE_DISTANCE_FOR_CALCULATION |
3.0f |
org.jmol.geodesic.Geodesic | ||
---|---|---|
private static final int |
maxLevel |
4 |
static final float |
oneFifth |
1.2566370964050293f |
static final float |
oneTenth |
0.6283185482025146f |
public static final int |
standardLevel |
3 |
private static final boolean |
VALIDATE |
true |
org.jmol.jcamp.GraphCharacteristics | ||
---|---|---|
private static final java.lang.String |
INTEGRATION_DELIM |
"," |
private static final java.lang.String |
INTEGRATION_VALUES_DELIM |
":" |
private static final int |
MAX_DECIMALS |
2 |
org.jmol.jvxl.calc.MarchingSquares | ||
---|---|---|
public static final int |
CONTOUR_POINT |
-1 |
private static final int |
defaultContourCount |
11 |
public static final int |
EDGE_POINT |
-3 |
private static final int |
nContourMax |
100 |
public static final int |
VERTEX_POINT |
-2 |
org.jmol.jvxl.data.MeshData | ||
---|---|---|
public static final int |
MODE_GET_COLOR_INDEXES |
2 |
public static final int |
MODE_GET_VERTICES |
1 |
public static final int |
MODE_PUT_SETS |
3 |
private static final int |
SEED_COUNT |
25 |
org.jmol.jvxl.readers.org.jmol.jvxl.readers.IsoShapeReader | ||
---|---|---|
private static final double |
A0 |
0.5291799902915955 |
private static final double |
ROOT2 |
1.414214 |
org.jmol.jvxl.readers.JvxlReader | ||
---|---|---|
private static final java.lang.String |
JVXL_VERSION |
"1.4" |
org.jmol.jvxl.readers.Parameters | ||
---|---|---|
static final float |
ANGSTROMS_PER_BOHR |
0.529177188873291f |
static final int |
CAN_CONTOUR |
512 |
static final int |
defaultColorFractionBase |
35 |
static final int |
defaultColorFractionRange |
90 |
static final int |
defaultColorNegative |
-65536 |
static final int |
defaultColorNegativeLCAO |
-8388480 |
static final int |
defaultColorPositive |
-16776961 |
static final int |
defaultColorPositiveLCAO |
-23296 |
static final int |
defaultContourCount |
11 |
static final float |
defaultCutoff |
0.019999999552965164f |
static final int |
defaultEdgeFractionBase |
35 |
static final int |
defaultEdgeFractionRange |
90 |
static final float |
defaultMappedDataMax |
1.0f |
static final float |
defaultMappedDataMin |
0.0f |
static final float |
defaultMepCutoff |
0.05000000074505806f |
static final float |
defaultMepMax |
0.05000000074505806f |
static final float |
defaultMepMin |
-0.05000000074505806f |
static final float |
defaultOrbitalCutoff |
0.14000000059604645f |
public static final float |
defaultQMOrbitalCutoff |
0.05000000074505806f |
static final float |
defaultSolventRadius |
1.2000000476837158f |
static final int |
HAS_MAXGRID |
256 |
static final int |
IS_SILENT |
64 |
static final int |
IS_SOLVENTTYPE |
128 |
public static final int |
MEP_MAX_GRID |
40 |
public static final int |
MO_MAX_GRID |
80 |
static final int |
nContourMax |
100 |
static final int |
NO_ANISOTROPY |
32 |
static final int |
QM_TYPE_GAUSSIAN |
1 |
static final int |
QM_TYPE_SLATER |
2 |
static final int |
QM_TYPE_UNKNOWN |
0 |
public static final int |
STATE_DATA_COLORED |
3 |
public static final int |
STATE_DATA_READ |
2 |
public static final int |
STATE_INITIALIZED |
1 |
public static final int |
STATE_UNINITIALIZED |
0 |
static final int |
SURFACE_ATOMICORBITAL |
14 |
static final int |
SURFACE_ELLIPSOID2 |
66 |
static final int |
SURFACE_ELLIPSOID3 |
67 |
static final int |
SURFACE_FILE |
529 |
static final int |
SURFACE_FUNCTIONXY |
518 |
static final int |
SURFACE_INFO |
530 |
static final int |
SURFACE_LCAOCARTOON |
69 |
static final int |
SURFACE_LOBE |
68 |
static final int |
SURFACE_MEP |
304 |
static final int |
SURFACE_MOLECULAR |
179 |
static final int |
SURFACE_MOLECULARORBITAL |
301 |
static final int |
SURFACE_NOMAP |
180 |
static final int |
SURFACE_NONE |
0 |
static final int |
SURFACE_PROPERTY |
181 |
static final int |
SURFACE_SASURFACE |
172 |
static final int |
SURFACE_SOLVENT |
171 |
static final int |
SURFACE_SPHERE |
65 |
org.jmol.jvxl.readers.VoxelReader | ||
---|---|---|
static final float |
ANGSTROMS_PER_BOHR |
0.529177188873291f |
static final int |
defaultColorFractionBase |
35 |
static final int |
defaultColorFractionRange |
90 |
static final float |
defaultCutoff |
0.019999999552965164f |
static final int |
defaultEdgeFractionBase |
35 |
static final int |
defaultEdgeFractionRange |
90 |
static final float |
defaultMappedDataMax |
1.0f |
static final float |
defaultMappedDataMin |
0.0f |
org.jmol.minimize.Minimizer | ||
---|---|---|
static final int |
PT_CHARGE |
5 |
static final int |
PT_CONNECT |
6 |
static final int |
PT_ELEMENT |
2 |
static final int |
TOKEN_ELEMENT_AROMATIC |
3 |
static final int |
TOKEN_ELEMENT_CHARGED |
1 |
static final int |
TOKEN_ELEMENT_CONNECTED |
2 |
static final int |
TOKEN_ELEMENT_ONLY |
0 |
static final int |
TOKEN_ELEMENT_SP |
4 |
static final int |
TOKEN_ELEMENT_SP2 |
5 |
org.jmol.minimize.Util | ||
---|---|---|
public static final double |
DEG_TO_RAD |
0.017453292519943295 |
static final double |
max_squarable_double |
1.0E150 |
static final double |
min_squarable_double |
1.0E-150 |
public static final double |
RAD_TO_DEG |
57.29577951308232 |
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.Calculations | ||
---|---|---|
static final int |
CALC_ANGLE |
1 |
static final int |
CALC_DISTANCE |
0 |
static final int |
CALC_ES |
5 |
static final int |
CALC_MAX |
6 |
static final int |
CALC_OOP |
3 |
static final int |
CALC_TORSION |
2 |
static final int |
CALC_VDW |
4 |
public static final double |
DEG_TO_RAD |
0.017453292519943295 |
static final double |
KCAL_TO_KJ |
4.1868 |
private static final double |
PI_OVER_2 |
1.5707963267948966 |
public static final double |
RAD_TO_DEG |
57.29577951308232 |
private static final double |
TWO_PI |
6.283185307179586 |
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.CalculationsUFF | ||
---|---|---|
static final double |
KCAL22 |
92.1096 |
static final double |
KCAL332 |
1390.2842991599998 |
static final double |
KCAL44 |
184.2192 |
static final double |
KCAL6 |
25.1208 |
static final double |
KCAL644 |
2696.8016159999997 |
public static final int |
PAR_D |
3 |
public static final int |
PAR_HARD |
9 |
public static final int |
PAR_R |
0 |
public static final int |
PAR_RADIUS |
10 |
public static final int |
PAR_THETA |
1 |
public static final int |
PAR_U |
7 |
public static final int |
PAR_V |
6 |
public static final int |
PAR_X |
2 |
public static final int |
PAR_XI |
8 |
public static final int |
PAR_Z |
5 |
public static final int |
PAR_ZETA |
4 |
org.jmol.minimize.forcefield.ForceField | ||
---|---|---|
static final int |
EANGLE |
4 |
static final int |
EBOND |
2 |
static final int |
EELECTROSTATIC |
128 |
static final int |
ENERGY |
1 |
static final int |
EOOP |
32 |
static final int |
ESTRBND |
8 |
static final int |
ETORSION |
16 |
static final int |
EVDW |
64 |
org.jmol.modelset.Atom | ||
---|---|---|
private static final byte |
FLAG_MASK |
3 |
private static final byte |
IS_HETERO_FLAG |
2 |
private static final byte |
VIBRATION_VECTOR_FLAG |
1 |
org.jmol.modelset.AtomCollection | ||
---|---|---|
private static final int |
minimumPixelSelectionRadius |
6 |
protected static final boolean |
showRebondTimes |
true |
public static final byte |
TAINT_COORD |
0 |
private static final byte |
TAINT_FORMALCHARGE |
1 |
public static final byte |
TAINT_MAX |
8 |
private static final byte |
TAINT_OCCUPANCY |
2 |
private static final byte |
TAINT_PARTIALCHARGE |
3 |
private static final byte |
TAINT_TEMPERATURE |
4 |
private static final byte |
TAINT_VALENCE |
5 |
private static final byte |
TAINT_VANDERWAALS |
6 |
private static final byte |
TAINT_VIBRATION |
7 |
org.jmol.modelset.BondCollection | ||
---|---|---|
private static final int |
bondGrowthIncrement |
250 |
protected static final int |
MAX_BONDS_LENGTH_TO_CACHE |
5 |
protected static final int |
MAX_NUM_TO_CACHE |
200 |
org.jmol.modelset.Group | ||
---|---|---|
private static final int |
INSERTION_CODE_MASK |
127 |
private static final int |
SEQUENCE_NUMBER_FLAG |
128 |
private static final int |
SEQUENCE_NUMBER_SHIFT |
8 |
org.jmol.modelset.ModelLoader | ||
---|---|---|
private static final int |
ATOM_GROWTH_INCREMENT |
2000 |
private static final int |
defaultGroupCount |
32 |
org.jmol.modelset.ModelSet | ||
---|---|---|
private static final boolean |
useRasMolHbondsCalculation |
true |
org.jmol.modelset.Polymer | ||
---|---|---|
protected static final int |
TYPE_AMINO |
1 |
protected static final int |
TYPE_CARBOHYDRATE |
3 |
protected static final int |
TYPE_NUCLEIC |
2 |
protected static final int |
TYPE_OTHER |
0 |
org.jmol.modelsetbio.AlphaPolymer | ||
---|---|---|
static final byte |
CODE_BETA_SHEET |
2 |
static final byte |
CODE_LEFT_HELIX |
3 |
static final byte |
CODE_LEFT_TURN |
4 |
static final byte |
CODE_NADA |
0 |
static final byte |
CODE_RIGHT_HELIX |
1 |
static final byte |
CODE_RIGHT_TURN |
5 |
static final byte |
TAG_HELIX |
3 |
static final byte |
TAG_NADA |
0 |
static final byte |
TAG_SHEET |
2 |
static final byte |
TAG_TURN |
1 |
org.jmol.modelsetbio.AminoMonomer | ||
---|---|---|
private static final float |
beta |
0.296705961227417f |
private static final byte |
C |
3 |
private static final byte |
CA |
0 |
private static final byte |
N |
2 |
private static final byte |
O |
1 |
private static final byte |
OT |
4 |
org.jmol.modelsetbio.AminoPolymer | ||
---|---|---|
private static final float |
maxHbondAlphaDistance |
9.0f |
private static final float |
maxHbondAlphaDistance2 |
81.0f |
private static final float |
minimumHbondDistance2 |
0.5f |
private static final double |
QConst |
-27888.0 |
org.jmol.modelsetbio.NucleicMonomer | ||
---|---|---|
private static final byte |
C2 |
5 |
private static final byte |
C3Pr |
22 |
private static final byte |
C4 |
7 |
private static final byte |
C5 |
3 |
static final byte |
C6 |
1 |
private static final byte |
C8 |
10 |
private static final byte |
H3T |
20 |
private static final byte |
H5T |
18 |
private static final byte |
N1 |
4 |
private static final byte |
N2 |
17 |
private static final byte |
N3 |
6 |
private static final byte |
N4 |
14 |
private static final byte |
N6 |
16 |
private static final byte |
N7 |
9 |
private static final byte |
N9 |
11 |
private static final byte |
NP |
15 |
private static final byte |
O1P |
23 |
private static final byte |
O2 |
8 |
private static final byte |
O2P |
24 |
private static final byte |
O2Pr |
2 |
private static final byte |
O3Pr |
21 |
private static final byte |
O4 |
12 |
private static final byte |
O5Pr |
19 |
private static final byte |
O6 |
13 |
org.jmol.modelsetbio.NucleicPolymer | ||
---|---|---|
private static final short |
HBOND_MASK |
18432 |
org.jmol.popup.JmolPopup | ||
---|---|---|
private static final boolean |
dumpList |
false |
private static final boolean |
forceAwt |
false |
static final int |
MAX_ITEMS |
25 |
static final int |
TITLE_MAX_WIDTH |
20 |
static final int |
UPDATE_ALL |
0 |
static final int |
UPDATE_CONFIG |
1 |
static final int |
UPDATE_SHOW |
2 |
org.jmol.quantum.MOCalculation | ||
---|---|---|
private static final float |
ROOT3 |
1.7320507764816284f |
org.jmol.quantum.org.jmol.quantum.QuantumCalculation | ||
---|---|---|
protected static final float |
bohr_per_angstrom |
1.8897161483764648f |
org.jmol.shape.Axes | ||
---|---|---|
private static final float |
MIN_AXIS_LEN |
1.5f |
org.jmol.shape.Dots | ||
---|---|---|
static final float |
SURFACE_DISTANCE_FOR_CALCULATION |
10.0f |
org.jmol.shape.Echo | ||
---|---|---|
private static final short |
COLOR |
10 |
private static final java.lang.String |
FONTFACE |
"Serif" |
private static final int |
FONTSIZE |
20 |
org.jmol.shape.Frank | ||
---|---|---|
static final java.lang.String |
defaultFontName |
"SansSerif" |
static final int |
defaultFontSize |
16 |
static final java.lang.String |
defaultFontStyle |
"Bold" |
static final int |
frankMargin |
4 |
org.jmol.shape.Hover | ||
---|---|---|
private static final java.lang.String |
FONTFACE |
"SansSerif" |
private static final int |
FONTSIZE |
12 |
private static final java.lang.String |
FONTSTYLE |
"Plain" |
org.jmol.shape.Labels | ||
---|---|---|
static final int |
ALIGN_FLAGS |
12 |
static final int |
FLAG_OFFSET |
8 |
static final int |
FLAGS |
255 |
static final int |
FRONT_FLAG |
32 |
static final int |
GROUP_FLAG |
16 |
static final int |
POINTER_FLAGS |
3 |
static final int |
SCALE_FLAG |
64 |
static final int |
ZPOS_FLAGS |
48 |
org.jmol.shape.Measures | ||
---|---|---|
private static final int |
measurementGrowthIncrement |
16 |
org.jmol.shape.Mesh | ||
---|---|---|
public static final java.lang.String |
PREVIOUS_MESH_ID |
"+PREVIOUS_MESH+" |
public static final int |
SEED_COUNT |
25 |
org.jmol.shape.Object2d | ||
---|---|---|
protected static final int |
ALIGN_CENTER |
2 |
public static final int |
ALIGN_LEFT |
1 |
protected static final int |
ALIGN_NONE |
0 |
protected static final int |
ALIGN_RIGHT |
3 |
public static final int |
POINTER_BACKGROUND |
2 |
public static final int |
POINTER_NONE |
0 |
public static final int |
POINTER_ON |
1 |
protected static final int |
VALIGN_BOTTOM |
2 |
protected static final int |
VALIGN_MIDDLE |
3 |
protected static final int |
VALIGN_TOP |
1 |
public static final int |
VALIGN_XY |
0 |
public static final int |
VALIGN_XYZ |
4 |
org.jmol.shape.Sticks | ||
---|---|---|
private static final int |
MAX_BOND_CLICK_DISTANCE_SQUARED |
100 |
org.jmol.shapebio.org.jmol.shapebio.BioShape | ||
---|---|---|
private static final double |
eightPiSquared100 |
7895.6835208714865 |
org.jmol.shapebio.org.jmol.shapebio.BioShapeRenderer | ||
---|---|---|
private static final int |
ABSOLUTE_MIN_MESH_SIZE |
3 |
private static final int |
MIN_MESH_RENDER_SIZE |
8 |
org.jmol.shapebio.RocketsRenderer | ||
---|---|---|
private static final float |
MIN_CONE_HEIGHT |
0.05000000074505806f |
org.jmol.shapespecial.org.jmol.shapespecial.Dipole | ||
---|---|---|
static final short |
DIPOLE_TYPE_ATOMS |
2 |
static final short |
DIPOLE_TYPE_BOND |
3 |
static final short |
DIPOLE_TYPE_MOLECULAR |
4 |
static final short |
DIPOLE_TYPE_POINTS |
1 |
static final short |
DIPOLE_TYPE_POINTVECTOR |
5 |
static final short |
DIPOLE_TYPE_UNKNOWN |
0 |
org.jmol.shapespecial.Dipoles | ||
---|---|---|
static final short |
DEFAULT_MAD |
5 |
static final float |
DEFAULT_OFFSETSIDE |
0.4000000059604645f |
private static final float |
E_ANG_PER_DEBYE |
0.20819400250911713f |
org.jmol.shapespecial.DipolesRenderer | ||
---|---|---|
private static final int |
arrowHeadBase |
4 |
private static final float |
arrowHeadOffset |
0.8999999761581421f |
private static final int |
arrowHeadTip |
5 |
private static final float |
arrowHeadWidthFactor |
2.0f |
private static final int |
center |
3 |
private static final int |
cross |
1 |
private static final int |
crossEnd |
2 |
private static final float |
crossOffset |
0.10000000149011612f |
private static final float |
crossWidth |
0.03999999910593033f |
private static final int |
cylinderBase |
0 |
org.jmol.shapespecial.Draw | ||
---|---|---|
private static final int |
MAX_OBJECT_CLICK_DISTANCE_SQUARED |
100 |
private static final int |
PT_BITSET |
3 |
private static final int |
PT_COORD |
1 |
private static final int |
PT_IDENTIFIER |
2 |
private static final int |
PT_MODEL_BASED_POINTS |
5 |
private static final int |
PT_MODEL_INDEX |
4 |
org.jmol.shapespecial.EllipsoidsRenderer | ||
---|---|---|
private static final float |
toRadians |
0.01745329238474369f |
org.jmol.shapespecial.Polyhedra | ||
---|---|---|
private static final float |
DEFAULT_DISTANCE_FACTOR |
1.850000023841858f |
private static final float |
DEFAULT_FACECENTEROFFSET |
0.25f |
static final int |
EDGES_ALL |
1 |
static final int |
EDGES_FRONT |
2 |
private static final int |
EDGES_NONE |
0 |
private static final int |
FACE_COUNT_MAX |
147 |
private static final int |
MAX_VERTICES |
150 |
org.jmol.shapespecial.VectorsRenderer | ||
---|---|---|
static final float |
arrowHeadOffset |
-0.20000000298023224f |
org.jmol.shapesurface.Pmesh | ||
---|---|---|
private static final java.lang.String |
PMESH_BINARY_MAGIC_NUMBER |
"PM\u0001\u0000" |
org.jmol.smiles.SmilesAtom | ||
---|---|---|
public static final java.lang.String |
CHIRALITY_ALLENE |
"AL" |
public static final java.lang.String |
CHIRALITY_OCTAHEDRAL |
"OH" |
public static final java.lang.String |
CHIRALITY_SQUARE_PLANAR |
"SP" |
public static final java.lang.String |
CHIRALITY_TETRAHEDRAL |
"TH" |
public static final java.lang.String |
CHIRALITY_TRIGONAL_BIPYRAMIDAL |
"TB" |
public static final java.lang.String |
DEFAULT_CHIRALITY |
"" |
private static final int |
INITIAL_BONDS |
4 |
org.jmol.smiles.SmilesBond | ||
---|---|---|
public static final char |
CODE_AROMATIC |
58 |
public static final char |
CODE_DIRECTIONAL_1 |
47 |
public static final char |
CODE_DIRECTIONAL_2 |
92 |
public static final char |
CODE_DOUBLE |
61 |
public static final char |
CODE_NONE |
46 |
public static final char |
CODE_SINGLE |
45 |
public static final char |
CODE_TRIPLE |
35 |
public static final int |
TYPE_AROMATIC |
4 |
public static final int |
TYPE_DIRECTIONAL_1 |
5 |
public static final int |
TYPE_DIRECTIONAL_2 |
6 |
public static final int |
TYPE_DOUBLE |
2 |
public static final int |
TYPE_NONE |
0 |
public static final int |
TYPE_SINGLE |
1 |
public static final int |
TYPE_TRIPLE |
3 |
public static final int |
TYPE_UNKOWN |
-1 |
org.jmol.smiles.SmilesMolecule | ||
---|---|---|
private static final int |
INITIAL_ATOMS |
16 |
private static final int |
INITIAL_BONDS |
16 |
org.jmol.symmetry.org.jmol.symmetry.PointGroup | ||
---|---|---|
private static final int |
ATOM_COUNT_MAX |
100 |
private static final int |
c2 |
16 |
private static final int |
c3 |
17 |
private static final int |
c4 |
18 |
private static final int |
c5 |
19 |
private static final int |
c6 |
20 |
private static final int |
c8 |
22 |
private static final int |
firstProper |
14 |
static final int |
OPERATION_IMPROPER_AXIS |
2 |
static final int |
OPERATION_INVERSION_CENTER |
3 |
static final int |
OPERATION_PLANE |
0 |
static final int |
OPERATION_PROPER_AXIS |
1 |
private static final int |
s10 |
10 |
private static final int |
s12 |
12 |
private static final int |
s3 |
3 |
private static final int |
s4 |
4 |
private static final int |
s5 |
5 |
private static final int |
s6 |
6 |
private static final int |
s8 |
8 |
org.jmol.symmetry.org.jmol.symmetry.SpaceGroup | ||
---|---|---|
private static final int |
SPACE_GROUP_QUERY |
9999 |
org.jmol.symmetry.org.jmol.symmetry.UnitCell | ||
---|---|---|
static final float |
toRadians |
0.01745329238474369f |
org.jmol.symmetry.org.jmol.symmetry.UnitCell.Data | ||
---|---|---|
static final double |
twoP2 |
19.739208802178716 |
org.jmol.util.ColorEncoder | ||
---|---|---|
public static final int |
AMINO |
9 |
public static final int |
BGYOR |
1 |
public static final int |
BWR |
3 |
private static final java.lang.String |
BYELEMENT_JMOL |
"byelement_jmol" |
public static final java.lang.String |
BYELEMENT_PREFIX |
"byelement" |
private static final java.lang.String |
BYELEMENT_RASMOL |
"byelement_rasmol" |
private static final java.lang.String |
BYRESIDUE_AMINO |
"byresidue_amino" |
public static final java.lang.String |
BYRESIDUE_PREFIX |
"byresidue" |
private static final java.lang.String |
BYRESIDUE_SHAPELY |
"byresidue_shapely" |
private static final int |
GRAY |
-8355712 |
public static final int |
HIGH |
5 |
public static final int |
JMOL |
6 |
public static final int |
LOW |
4 |
public static final int |
RASMOL |
7 |
public static final int |
RESU |
-11 |
public static final int |
ROYGB |
0 |
public static final int |
RWB |
2 |
public static final int |
SHAPELY |
8 |
public static final int |
USER |
-10 |
org.jmol.util.CommandHistory | ||
---|---|---|
static final int |
DEFAULT_MAX_SIZE |
100 |
public static final java.lang.String |
ERROR_FLAG |
"#??" |
public static final java.lang.String |
NOHISTORYATALL_FLAG |
"#----" |
public static final java.lang.String |
NOHISTORYLINE_FLAG |
"#--" |
org.jmol.util.org.jmol.util.DCT | ||
---|---|---|
private static final int |
N |
8 |
private static final int |
NN |
64 |
org.jmol.util.Escape | ||
---|---|---|
private static final java.lang.String |
escapable |
"\\\\\tt\rr\nn\"\"" |
org.jmol.util.Logger | ||
---|---|---|
public static final int |
LEVEL_DEBUG |
5 |
public static final int |
LEVEL_DEBUGHIGH |
6 |
public static final int |
LEVEL_ERROR |
2 |
public static final int |
LEVEL_FATAL |
1 |
public static final int |
LEVEL_INFO |
4 |
public static final int |
LEVEL_MAX |
7 |
public static final int |
LEVEL_WARN |
3 |
org.jmol.util.Measure | ||
---|---|---|
public static final float |
radiansPerDegree |
0.01745329238474369f |
org.jmol.util.TempArray | ||
---|---|---|
private static final int |
freeBytesSize |
2 |
private static final int |
freePointsSize |
6 |
private static final int |
freeScreensSize |
6 |
org.jmol.viewer.org.jmol.viewer.Compiler | ||
---|---|---|
private static final int |
ERROR_badArgumentCount |
0 |
private static final int |
ERROR_badContext |
1 |
private static final int |
ERROR_commandExpected |
2 |
private static final int |
ERROR_coordinateExpected |
3 |
private static final int |
ERROR_endOfCommandUnexpected |
4 |
private static final int |
ERROR_endOfExpressionExpected |
5 |
private static final int |
ERROR_identifierOrResidueSpecificationExpected |
6 |
private static final int |
ERROR_invalidAtomSpecification |
7 |
private static final int |
ERROR_invalidChainSpecification |
8 |
private static final int |
ERROR_invalidExpressionToken |
9 |
private static final int |
ERROR_invalidModelSpecification |
10 |
private static final int |
ERROR_missingEnd |
11 |
private static final int |
ERROR_numberExpected |
12 |
private static final int |
ERROR_numberOrVariableNameExpected |
13 |
private static final int |
ERROR_residueSpecificationExpected |
14 |
private static final int |
ERROR_tokenExpected |
15 |
private static final int |
ERROR_tokenUnexpected |
16 |
private static final int |
ERROR_unrecognizedExpressionToken |
17 |
private static final int |
ERROR_unrecognizedParameter |
18 |
private static final int |
ERROR_unrecognizedToken |
19 |
org.jmol.viewer.FileManager | ||
---|---|---|
private static final int |
URL_LOCAL |
3 |
org.jmol.viewer.JmolConstants | ||
---|---|---|
private static final java.lang.String |
allCarbohydrates |
",[AFL],[AGC],[AHR],[ARA],[ARB],[BDF],[BDR],[BGC],[BMA],[FCA],[FCB],[FRU],[FUC],[FUL],[GAL],[GLA],[GLB],[GLC],[GUP],[LXC],[MAN],[RAA],[RAM],[RIB],[RIP],[XYP],[XYS],[CBI],[CT3],[CTR],[CTT],[LAT],[MAB],[MAL],[MLR],[MTT],[SUC],[TRE],[ASF],[GCU],[MTL],[NAG],[NAM],[RHA],[SOR],[XYL]" |
public static final float |
ANGSTROMS_PER_BOHR |
0.529177188873291f |
public static final int |
argbShapelyBackbone |
-4671304 |
public static final int |
argbShapelyDefault |
-65281 |
public static final int |
argbShapelySpecial |
-10616738 |
public static final int |
ATOM_IN_MODEL |
1 |
public static final int |
ATOM_SLABBED |
2 |
public static final byte |
ATOMID_ALPHA_CARBON |
2 |
public static final int |
ATOMID_ALPHA_ONLY_MASK |
4 |
public static final byte |
ATOMID_AMINO_NITROGEN |
1 |
private static final int |
ATOMID_BACKBONE_MIN |
64 |
public static final byte |
ATOMID_C2 |
33 |
public static final byte |
ATOMID_C3_PRIME |
9 |
public static final byte |
ATOMID_C4 |
35 |
public static final byte |
ATOMID_C5 |
36 |
public static final byte |
ATOMID_C5M |
45 |
public static final byte |
ATOMID_C6 |
37 |
public static final byte |
ATOMID_C7 |
49 |
public static final byte |
ATOMID_C8 |
40 |
public static final byte |
ATOMID_CARBONYL_CARBON |
3 |
public static final byte |
ATOMID_CARBONYL_OXYGEN |
4 |
public static final int |
ATOMID_DISTINGUISHING_ATOM_MAX |
14 |
public static final byte |
ATOMID_H3T_TERMINUS |
88 |
public static final byte |
ATOMID_H5T_TERMINUS |
72 |
public static final byte |
ATOMID_HO3_PRIME |
89 |
public static final byte |
ATOMID_HO5_PRIME |
90 |
public static final byte |
ATOMID_N1 |
32 |
public static final byte |
ATOMID_N2 |
43 |
public static final byte |
ATOMID_N3 |
34 |
public static final byte |
ATOMID_N4 |
42 |
public static final byte |
ATOMID_N6 |
44 |
public static final byte |
ATOMID_N7 |
39 |
public static final byte |
ATOMID_N9 |
41 |
public static final int |
ATOMID_NUCLEIC_MASK |
8128 |
public static final byte |
ATOMID_NUCLEIC_PHOSPHORUS |
13 |
public static final byte |
ATOMID_O1 |
5 |
public static final byte |
ATOMID_O1P |
74 |
public static final byte |
ATOMID_O2 |
38 |
public static final byte |
ATOMID_O2_PRIME |
79 |
public static final byte |
ATOMID_O2P |
76 |
public static final byte |
ATOMID_O3_PRIME |
10 |
public static final byte |
ATOMID_O4 |
47 |
public static final byte |
ATOMID_O5_PRIME |
6 |
public static final byte |
ATOMID_O5T_TERMINUS |
73 |
public static final byte |
ATOMID_O6 |
46 |
public static final byte |
ATOMID_OP1 |
75 |
public static final byte |
ATOMID_OP2 |
77 |
public static final int |
ATOMID_PHOSPHORUS_ONLY_MASK |
8192 |
public static final int |
ATOMID_PROTEIN_MASK |
14 |
public static final byte |
ATOMID_S4 |
48 |
public static final byte |
ATOMID_TERMINATING_OXT |
64 |
public static final int |
AXES_DEFAULT_FONTSIZE |
14 |
public static final int |
AXES_MODE_BOUNDBOX |
0 |
public static final int |
AXES_MODE_MOLECULAR |
1 |
public static final int |
AXES_MODE_UNITCELL |
2 |
public static final int |
BACKLIT |
67108870 |
public static final short |
BOND_AROMATIC |
515 |
public static final short |
BOND_AROMATIC_DOUBLE |
514 |
public static final short |
BOND_AROMATIC_MASK |
512 |
public static final short |
BOND_AROMATIC_SINGLE |
513 |
public static final short |
BOND_COVALENT_DOUBLE |
2 |
public static final short |
BOND_COVALENT_MASK |
1023 |
public static final short |
BOND_COVALENT_QUADRUPLE |
4 |
public static final short |
BOND_COVALENT_SINGLE |
1 |
public static final short |
BOND_COVALENT_TRIPLE |
3 |
public static final short |
BOND_H_CALC |
4096 |
public static final short |
BOND_H_CALC_MASK |
28672 |
public static final short |
BOND_H_MINUS_3 |
14336 |
public static final short |
BOND_H_MINUS_4 |
16384 |
public static final short |
BOND_H_NUCLEOTIDE |
18432 |
public static final short |
BOND_H_PLUS_2 |
6144 |
public static final short |
BOND_H_PLUS_3 |
8192 |
public static final short |
BOND_H_PLUS_4 |
10240 |
public static final short |
BOND_H_PLUS_5 |
12288 |
public static final short |
BOND_H_REGULAR |
2048 |
public static final short |
BOND_HBOND_SHIFT |
11 |
public static final short |
BOND_HYDROGEN_MASK |
30720 |
public static final short |
BOND_NEW |
-32768 |
public static final short |
BOND_ORDER_ANY |
16383 |
public static final short |
BOND_ORDER_NULL |
32767 |
public static final short |
BOND_ORDER_UNSPECIFIED |
7 |
public static final short |
BOND_PARTIAL_MASK |
224 |
public static final short |
BOND_PARTIAL01 |
33 |
public static final short |
BOND_PARTIAL12 |
66 |
public static final short |
BOND_PARTIAL23 |
97 |
public static final short |
BOND_PARTIAL32 |
100 |
public static final short |
BOND_STEREO_FAR |
1026 |
public static final short |
BOND_STEREO_MASK |
1024 |
public static final short |
BOND_STEREO_NEAR |
1025 |
public static final short |
BOND_SULFUR_MASK |
256 |
public static final int |
CALLBACK_ANIMFRAME |
0 |
public static final int |
CALLBACK_COUNT |
12 |
public static final int |
CALLBACK_ECHO |
1 |
public static final int |
CALLBACK_EVAL |
2 |
public static final int |
CALLBACK_HOVER |
3 |
public static final int |
CALLBACK_LOADSTRUCT |
4 |
public static final int |
CALLBACK_MEASURE |
5 |
public static final int |
CALLBACK_MESSAGE |
6 |
public static final int |
CALLBACK_MINIMIZATION |
7 |
public static final int |
CALLBACK_PICK |
8 |
public static final int |
CALLBACK_RESIZE |
9 |
public static final int |
CALLBACK_SCRIPT |
10 |
public static final int |
CALLBACK_SYNC |
11 |
public static final java.lang.String |
CLASSBASE_OPTIONS |
"org.jmol." |
public static final int |
CONNECT_AUTO_BOND |
4 |
public static final int |
CONNECT_CREATE_ONLY |
2 |
public static final int |
CONNECT_DELETE_BONDS |
0 |
public static final int |
CONNECT_IDENTIFY_ONLY |
5 |
public static final int |
CONNECT_MODIFY_ONLY |
1 |
public static final int |
CONNECT_MODIFY_OR_CREATE |
3 |
public static final java.lang.String |
copyright |
"(C) 2008 Jmol Development" |
public static final java.lang.String |
cvsDate |
"$Date: 2008-11-24 14:39:37 +0200 (Mon, 24 Nov 2008) $" |
public static final short |
DEFAULT_BOND_MILLIANGSTROM_RADIUS |
150 |
public static final float |
DEFAULT_BOND_RADIUS |
0.15000000596046448f |
public static final float |
DEFAULT_BOND_TOLERANCE |
0.44999998807907104f |
public static final java.lang.String |
DEFAULT_FONTFACE |
"SansSerif" |
public static final java.lang.String |
DEFAULT_FONTSTYLE |
"Plain" |
public static final java.lang.String |
DEFAULT_HELP_PATH |
"http://www.stolaf.edu/academics/chemapps/jmol/docs/index.htm" |
public static final float |
DEFAULT_MAX_CONNECT_DISTANCE |
1.0E8f |
public static final float |
DEFAULT_MIN_BOND_DISTANCE |
0.4000000059604645f |
public static final float |
DEFAULT_MIN_CONNECT_DISTANCE |
0.10000000149011612f |
public static final int |
DEFAULT_PERCENT_VDW_ATOM |
20 |
public static final int |
DRAW_ARC |
19 |
public static final int |
DRAW_ARROW |
15 |
public static final int |
DRAW_CIRCLE |
16 |
public static final int |
DRAW_CIRCULARPLANE |
18 |
public static final int |
DRAW_CURVE |
17 |
public static final int |
DRAW_CYLINDER |
5 |
public static final int |
DRAW_LINE |
2 |
public static final int |
DRAW_MULTIPLE |
-1 |
public static final int |
DRAW_NONE |
0 |
public static final int |
DRAW_PLANE |
4 |
public static final int |
DRAW_POINT |
1 |
public static final int |
DRAW_TRIANGLE |
3 |
public static final java.lang.String |
EMBEDDED_SCRIPT_TAG |
"**** Jmol Embedded Script ****" |
public static final java.lang.String |
EXPORT_DRIVER_LIST |
"Maya;Vrml;Povray" |
public static final int |
firstIsotope |
4 |
public static final int |
FORMAL_CHARGE_INDEX_WHITE |
4 |
public static final int |
FORMAL_CHARGE_MAX |
7 |
public static final int |
FORMAL_CHARGE_MIN |
-4 |
public static final int |
FORMAL_CHARGE_RANGE_SIZE |
12 |
public static final int |
FRONTLIT |
67108883 |
public static final int |
FULLYLIT |
67108885 |
public static final int |
GROUPID_AMINO_MAX |
24 |
public static final int |
GROUPID_PROLINE |
15 |
private static final int |
GROUPID_SULPHATE |
46 |
private static final int |
GROUPID_WATER |
42 |
public static final int |
INFO_A |
0 |
public static final int |
INFO_ALPHA |
3 |
public static final int |
INFO_B |
1 |
public static final int |
INFO_BETA |
4 |
public static final int |
INFO_C |
2 |
public static final int |
INFO_GAMMA |
5 |
public static final int |
JMOL_DATA_OTHER |
2 |
public static final int |
JMOL_DATA_QUATERNION |
1 |
public static final int |
JMOL_DATA_RAMACHANDRAN |
0 |
public static final int |
LABEL_DEFAULT_FONTSIZE |
13 |
public static final int |
LABEL_DEFAULT_X_OFFSET |
4 |
public static final int |
LABEL_DEFAULT_Y_OFFSET |
4 |
public static final int |
LABEL_MAXIMUM_FONTSIZE |
63 |
public static final int |
LABEL_MINIMUM_FONTSIZE |
6 |
public static final short |
madMultipleBondSmallMaximum |
500 |
public static final int |
MAXIMUM_AUTO_BOND_COUNT |
20 |
public static final int |
MEASURE_DEFAULT_FONTSIZE |
15 |
public static final int |
MOUSE_DELETE |
4 |
public static final int |
MOUSE_MEASURE |
5 |
public static final int |
MOUSE_NONE |
-1 |
public static final int |
MOUSE_PICK |
3 |
public static final int |
MOUSE_POPUP_MENU |
8 |
public static final int |
MOUSE_ROTATE |
0 |
public static final int |
MOUSE_ROTATE_Z |
6 |
public static final int |
MOUSE_SLAB_PLANE |
7 |
public static final int |
MOUSE_XLATE |
2 |
public static final int |
MOUSE_ZOOM |
1 |
public static final byte |
MULTIBOND_ALWAYS |
3 |
public static final byte |
MULTIBOND_NEVER |
0 |
public static final byte |
MULTIBOND_NOTSMALL |
2 |
public static final byte |
MULTIBOND_WIREFRAME |
1 |
private static final java.lang.String |
naturalIsotopes |
"1H,12C,14N," |
public static final boolean |
officialRelease |
false |
public static final byte |
PALETTE_ALTLOC |
14 |
public static final byte |
PALETTE_AMINO |
8 |
public static final byte |
PALETTE_CHAIN |
10 |
public static final byte |
PALETTE_CPK |
1 |
public static final byte |
PALETTE_FIXEDTEMP |
5 |
public static final byte |
PALETTE_FORMAL_CHARGE |
3 |
public static final byte |
PALETTE_GROUP |
75 |
public static final byte |
PALETTE_INSERTION |
15 |
public static final byte |
PALETTE_JMOL |
16 |
public static final byte |
PALETTE_MOLECULE |
77 |
public static final byte |
PALETTE_MONOMER |
76 |
public static final byte |
PALETTE_NONE |
0 |
public static final byte |
PALETTE_PARTIAL_CHARGE |
2 |
public static final byte |
PALETTE_PROPERTY |
83 |
public static final byte |
PALETTE_RASMOL |
17 |
public static final byte |
PALETTE_SHAPELY |
9 |
public static final byte |
PALETTE_STATIC |
63 |
public static final byte |
PALETTE_STRAIGHTNESS |
85 |
public static final byte |
PALETTE_STRUCTURE |
7 |
public static final byte |
PALETTE_SURFACE |
70 |
public static final byte |
PALETTE_TEMP |
68 |
public static final byte |
PALETTE_TYPE |
18 |
public static final byte |
PALETTE_UNKNOWN |
-1 |
public static final byte |
PALETTE_VARIABLE |
84 |
public static final byte |
PALETTE_VOLATILE |
64 |
public static final int |
PARTIAL_CHARGE_RANGE_SIZE |
31 |
public static final int |
PICKING_CENTER |
3 |
public static final int |
PICKING_DRAW |
4 |
public static final int |
PICKING_IDENT |
1 |
public static final int |
PICKING_LABEL |
2 |
public static final int |
PICKING_MEASURE |
15 |
public static final int |
PICKING_MEASURE_ANGLE |
17 |
public static final int |
PICKING_MEASURE_DISTANCE |
16 |
public static final int |
PICKING_MEASURE_TORSION |
18 |
public static final int |
PICKING_NAVIGATE |
19 |
public static final int |
PICKING_OFF |
0 |
public static final int |
PICKING_SELECT_ATOM |
8 |
public static final int |
PICKING_SELECT_CHAIN |
10 |
public static final int |
PICKING_SELECT_DRAG |
14 |
public static final int |
PICKING_SELECT_ELEMENT |
13 |
public static final int |
PICKING_SELECT_GROUP |
9 |
public static final int |
PICKING_SELECT_MOLECULE |
11 |
public static final int |
PICKING_SELECT_SITE |
12 |
public static final int |
PICKING_SPIN |
5 |
public static final int |
PICKINGSTYLE_MEASURE_OFF |
5 |
public static final int |
PICKINGSTYLE_MEASURE_ON |
4 |
public static final int |
PICKINGSTYLE_SELECT_CHIME |
0 |
public static final int |
PICKINGSTYLE_SELECT_DRAG |
3 |
public static final int |
PICKINGSTYLE_SELECT_JMOL |
0 |
public static final int |
PICKINGSTYLE_SELECT_PFAAT |
2 |
public static final int |
PICKINGSTYLE_SELECT_RASMOL |
1 |
public static final java.lang.String |
PREVIOUS_MESH_ID |
"+PREVIOUS_MESH+" |
public static final byte |
PROTEIN_STRUCTURE_DNA |
4 |
public static final byte |
PROTEIN_STRUCTURE_HELIX |
3 |
public static final byte |
PROTEIN_STRUCTURE_NONE |
0 |
public static final byte |
PROTEIN_STRUCTURE_RNA |
5 |
public static final byte |
PROTEIN_STRUCTURE_SHEET |
2 |
public static final byte |
PROTEIN_STRUCTURE_TURN |
1 |
public static final int |
SHAPE_AXES |
27 |
public static final int |
SHAPE_BACKBONE |
9 |
public static final int |
SHAPE_BALLS |
0 |
public static final int |
SHAPE_BBCAGE |
28 |
public static final int |
SHAPE_CARTOON |
11 |
public static final int |
SHAPE_DIPOLES |
16 |
public static final int |
SHAPE_DOTS |
6 |
public static final int |
SHAPE_DRAW |
21 |
public static final int |
SHAPE_ECHO |
26 |
public static final int |
SHAPE_ELLIPSOIDS |
19 |
public static final int |
SHAPE_FRANK |
31 |
public static final int |
SHAPE_GEOSURFACE |
18 |
public static final int |
SHAPE_HALOS |
8 |
public static final int |
SHAPE_HOVER |
30 |
public static final int |
SHAPE_HSTICKS |
2 |
public static final int |
SHAPE_ISOSURFACE |
22 |
public static final int |
SHAPE_LABELS |
4 |
public static final int |
SHAPE_LCAOCARTOON |
23 |
public static final int |
SHAPE_MAX |
32 |
public static final int |
SHAPE_MAX_HAS_ID |
27 |
public static final int |
SHAPE_MAX_MESH_COLLECTION |
26 |
public static final int |
SHAPE_MAX_SECONDARY |
16 |
public static final int |
SHAPE_MAX_SIZE_ZERO_ON_RESTRICT |
20 |
public static final int |
SHAPE_MAX_SPECIAL |
22 |
public static final int |
SHAPE_MAX_SURFACE |
26 |
public static final int |
SHAPE_MEASURES |
5 |
public static final int |
SHAPE_MESHRIBBON |
13 |
public static final int |
SHAPE_MIN_HAS_ID |
21 |
public static final int |
SHAPE_MIN_MESH_COLLECTION |
21 |
public static final int |
SHAPE_MIN_SECONDARY |
9 |
public static final int |
SHAPE_MIN_SPECIAL |
16 |
public static final int |
SHAPE_MIN_SURFACE |
22 |
public static final int |
SHAPE_MO |
24 |
public static final int |
SHAPE_PMESH |
25 |
public static final int |
SHAPE_POLYHEDRA |
20 |
public static final int |
SHAPE_RIBBONS |
14 |
public static final int |
SHAPE_ROCKETS |
15 |
public static final int |
SHAPE_SSSTICKS |
3 |
public static final int |
SHAPE_STARS |
7 |
public static final int |
SHAPE_STICKS |
1 |
public static final int |
SHAPE_STRANDS |
12 |
public static final int |
SHAPE_TRACE |
10 |
public static final int |
SHAPE_UCCAGE |
29 |
public static final int |
SHAPE_VECTORS |
17 |
public static final int |
SHELL_D_CARTESIAN |
3 |
public static final int |
SHELL_D_SPHERICAL |
4 |
public static final int |
SHELL_F_CARTESIAN |
5 |
public static final int |
SHELL_F_SPHERICAL |
6 |
public static final int |
SHELL_L |
2 |
public static final int |
SHELL_P |
1 |
public static final int |
SHELL_S |
0 |
public static final int |
SHELL_SP |
2 |
static final int |
STEREO_CUSTOM |
5 |
static final int |
STEREO_DOUBLE |
1 |
static final int |
STEREO_NONE |
0 |
static final int |
STEREO_REDBLUE |
3 |
static final int |
STEREO_REDCYAN |
2 |
static final int |
STEREO_REDGREEN |
4 |
static final int |
STEREO_UNKNOWN |
-1 |
public static final int |
VDW_BABEL |
1 |
public static final int |
VDW_JMOL |
0 |
public static final int |
VDW_RASMOL |
2 |
public static final int |
VDW_USER |
3 |
public static final int |
XY_ZTOP |
100 |
org.jmol.viewer.MouseManager | ||
---|---|---|
static final int |
ALT |
8 |
public static final int |
ALT_LEFT |
24 |
public static final int |
ALT_SHIFT_LEFT |
25 |
public static final int |
BUTTON_MODIFIER_MASK |
31 |
static final int |
CTRL |
2 |
static final int |
CTRL_ALT_LEFT |
26 |
static final int |
CTRL_ALT_SHIFT_LEFT |
27 |
static final int |
CTRL_ALT_SHIFT_RIGHT |
15 |
static final int |
CTRL_LEFT |
18 |
static final int |
CTRL_MIDDLE |
10 |
static final int |
CTRL_RIGHT |
6 |
static final int |
CTRL_SHIFT |
3 |
static final int |
CTRL_SHIFT_LEFT |
19 |
static final int |
CTRL_SHIFT_MIDDLE |
11 |
static final int |
CTRL_SHIFT_RIGHT |
7 |
static final int |
LEFT |
16 |
static final int |
LEFT_MIDDLE_RIGHT |
28 |
static final long |
MAX_DOUBLE_CLICK_MILLIS |
700L |
static final int |
MIDDLE |
8 |
static final int |
MIDDLE_RIGHT |
12 |
static final int |
RIGHT |
4 |
public static final int |
SHIFT |
1 |
public static final int |
SHIFT_LEFT |
17 |
static final int |
SHIFT_MIDDLE |
9 |
static final int |
SHIFT_RIGHT |
5 |
static final float |
wheelClickFractionDown |
0.8695652484893799f |
static final float |
wheelClickFractionUp |
1.149999976158142f |
org.jmol.viewer.org.jmol.viewer.PropertyManager | ||
---|---|---|
private static final java.lang.String |
atomExpression |
"<atom selection>" |
private static final int |
PROP_ANIMATION_INFO |
5 |
private static final int |
PROP_APPLET_INFO |
0 |
private static final int |
PROP_ATOM_INFO |
14 |
private static final int |
PROP_ATOM_LIST |
13 |
private static final int |
PROP_AUXILIARY_INFO |
24 |
private static final int |
PROP_BOND_INFO |
15 |
private static final int |
PROP_BOUNDBOX_INFO |
25 |
private static final int |
PROP_CENTER_INFO |
10 |
private static final int |
PROP_CHAIN_INFO |
16 |
private static final int |
PROP_COUNT |
32 |
private static final int |
PROP_DATA_INFO |
26 |
private static final int |
PROP_EVALUATE |
28 |
private static final int |
PROP_EXTRACT_MODEL |
20 |
private static final int |
PROP_FILECONTENTS |
4 |
static final int |
PROP_FILECONTENTS_PATH |
3 |
private static final int |
PROP_FILEHEADER |
2 |
private static final int |
PROP_FILENAME |
1 |
private static final int |
PROP_IMAGE |
27 |
private static final int |
PROP_JMOL_STATUS |
21 |
private static final int |
PROP_JMOL_VIEWER |
22 |
private static final int |
PROP_MEASUREMENT_INFO |
9 |
private static final int |
PROP_MENU |
29 |
private static final int |
PROP_MESSAGE_QUEUE |
23 |
private static final int |
PROP_MINIMIZATION_INFO |
30 |
private static final int |
PROP_MODEL_INFO |
6 |
private static final int |
PROP_MOLECULE_INFO |
18 |
private static final int |
PROP_ORIENTATION_INFO |
11 |
private static final int |
PROP_POINTGROUP_INFO |
31 |
private static final int |
PROP_POLYMER_INFO |
17 |
private static final int |
PROP_SHAPE_INFO |
8 |
private static final int |
PROP_STATE_INFO |
19 |
private static final int |
PROP_TRANSFORM_INFO |
12 |
org.jmol.viewer.org.jmol.viewer.RepaintManager | ||
---|---|---|
static final int |
ANIMATION_LOOP |
1 |
static final int |
ANIMATION_ONCE |
0 |
static final int |
ANIMATION_PALINDROME |
2 |
org.jmol.viewer.org.jmol.viewer.SelectionManager | ||
---|---|---|
private static final int |
FALSE |
0 |
private static final int |
TRUE |
1 |
private static final int |
UNKNOWN |
-1 |
org.jmol.viewer.StateManager | ||
---|---|---|
public static final int |
OBJ_AXIS1 |
1 |
public static final int |
OBJ_AXIS2 |
2 |
public static final int |
OBJ_AXIS3 |
3 |
public static final int |
OBJ_BACKGROUND |
0 |
public static final int |
OBJ_BOUNDBOX |
4 |
public static final int |
OBJ_FRANK |
6 |
public static final int |
OBJ_MAX |
7 |
public static final int |
OBJ_UNITCELL |
5 |
private static final java.lang.String |
objectNameList |
"background axis1 axis2 axis3 boundbox unitcell frank " |
org.jmol.viewer.org.jmol.viewer.StateManager.GlobalSettings | ||
---|---|---|
static final java.lang.String |
unreportedProperties |
";ambientpercent;animationfps;antialiasdisplay;antialiasimages;antialiastranslucent;appendnew;axescolor;axesposition;axesmolecular;axesorientationrasmol;axesunitcell;axeswindow;axis1color;axis2color;axis3color;backgroundcolor;backgroundmodel;bondsymmetryatoms;boundboxcolor;cameradepth;debugscript;defaultlatttice;defaults;diffusepercent;exportdrivers;fontscaling;language;loglevel;measureStyleChime;minimizationsteps;minimizationrefresh;minimizationcriterion;navigationmode;perspectivedepth;visualrange;perspectivemodel;refreshing;rotationradius;showaxes;showaxis1;showaxis2;showaxis3;showboundbox;showfrank;showunitcell;slabenabled;specular;specularexponent;specularpercent;specularpower;stateversion;statusreporting;stereo;stereostate;unitcellcolor;windowcentered;zerobasedxyzrasmol;zoomenabled;;scriptqueue;scriptreportinglevel;syncscript;syncmouse;currentlocalpath;ambient;bonds;colorrasmol;diffuse;frank;hetero;hidenotselected;hoverlabel;hydrogen;languagetranslation;measurementunits;navigationdepth;navigationslab;picking;pickingstyle;propertycolorschemeoverload;radius;rgbblue;rgbgreen;rgbred;scaleangstromsperinch;selectionhalos;showscript;showselections;solvent;strandcount;spinx;spiny;spinz;spinfps;animframecallback;echocallback;evalcallback;loadstructcallback;measurecallback;messagecallback;minimizationcallback;hovercallback;resizecallback;pickcallback;scriptcallback;synccallback;undo;" |
org.jmol.viewer.org.jmol.viewer.StatusManager | ||
---|---|---|
static final int |
SYNC_DISABLE |
3 |
static final int |
SYNC_DRIVER |
1 |
static final int |
SYNC_ENABLE |
4 |
static final int |
SYNC_OFF |
0 |
static final int |
SYNC_SLAVE |
2 |
org.jmol.viewer.Token | ||
---|---|---|
static final int |
absolute |
67108865 |
static final int |
add |
15729156 |
public static final int |
adpmax |
7340046 |
public static final int |
adpmin |
7340047 |
static final int |
all |
1048579 |
static final int |
altloc |
1048580 |
public static final int |
ambient |
134217729 |
static final int |
amino |
34603009 |
static final int |
angle |
9439233 |
static final int |
animation |
4097 |
static final int |
array |
9437185 |
static final int |
atomExpressionCommand |
12288 |
static final int |
atomID |
3145730 |
static final int |
atomIndex |
3145732 |
public static final int |
atomno |
3145729 |
static final int |
atomproperty |
3145728 |
public static final int |
atoms |
7340033 |
public static final int |
atomX |
3146112 |
public static final int |
atomY |
3146113 |
public static final int |
atomZ |
3146114 |
static final int |
average |
67108866 |
public static final int |
axes |
134746114 |
static final int |
axis |
67108867 |
static final int |
axisangle |
9439238 |
static final int |
babel |
67108868 |
static final int |
back |
67108869 |
static final int |
backbone |
35131395 |
static final int |
background |
134221828 |
public static final int |
backlit |
67108870 |
public static final int |
bitset |
67108871 |
static final int |
bondcount |
3145731 |
static final int |
bondmode |
134217730 |
static final int |
bondorder |
4101 |
public static final int |
bonds |
141557762 |
static final int |
bondset |
67108872 |
static final int |
bottom |
67108873 |
public static final int |
boundbox |
142086157 |
public static final int |
branch |
1048581 |
static final int |
breakcmd |
364551 |
static final int |
calculate |
4102 |
public static final int |
carbohydrate |
34603029 |
static final int |
cartoon |
528391 |
public static final int |
cell |
3145733 |
static final int |
center |
12289 |
static final int |
centerAt |
4104 |
public static final int |
chain |
1048582 |
static final int |
clear |
67108874 |
static final int |
clickable |
34603030 |
static final int |
clipboard |
67108875 |
static final int |
colon |
1048583 |
public static final int |
color |
141562115 |
static final int |
comma |
17825808 |
public static final int |
command |
4096 |
static final int |
comparator |
17826048 |
static final int |
comparefloatx100 |
128 |
static final int |
configuration |
4105 |
public static final int |
connect |
4106 |
public static final int |
connected |
9439746 |
static final int |
console |
528395 |
static final int |
constraint |
67108876 |
static final int |
continuecmd |
364552 |
static final int |
coord |
1048584 |
static final int |
cos |
9437701 |
public static final int |
cross |
9438210 |
static final int |
data |
9443330 |
static final int |
decimal |
3 |
static final int |
defaultColors |
134217738 |
static final int |
defaultON |
524288 |
static final int |
define |
135278594 |
static final int |
delay |
528396 |
public static final int |
delete |
12291 |
static final int |
depth |
528397 |
static final int |
diffuse |
134217740 |
static final int |
dipole |
4110 |
static final int |
direction |
67108877 |
static final int |
displacement |
67108878 |
static final int |
display |
134230020 |
static final int |
displayed |
34603031 |
static final int |
distance |
15729665 |
static final int |
div |
15729159 |
static final int |
divide |
17825920 |
public static final int |
dna |
34603010 |
static final int |
dollarsign |
1048585 |
static final int |
dot |
1048586 |
public static final int |
dots |
528399 |
static final int |
dotted |
67108879 |
public static final int |
draw |
4112 |
static final int |
echo |
134238209 |
public static final int |
element |
3145734 |
public static final int |
elemno |
3145735 |
static final int |
ellipsoid |
528401 |
static final int |
elsecmd |
364547 |
static final int |
elseif |
102402 |
static final int |
end |
233481 |
static final int |
endifcmd |
364548 |
static final int |
exit |
266258 |
static final int |
expression |
1048576 |
static final int |
expressionBegin |
1048577 |
static final int |
expressionEnd |
1048578 |
static final int |
file |
3149832 |
public static final int |
fill |
67108880 |
static final int |
find |
15729155 |
static final int |
fixedtemp |
67108881 |
static final int |
flowCommand |
102400 |
static final int |
font |
4115 |
static final int |
fontsize |
134217731 |
static final int |
forcmd |
102405 |
public static final int |
formalCharge |
137363721 |
public static final int |
fracX |
3146115 |
public static final int |
fracXyz |
7340298 |
public static final int |
fracY |
3146116 |
public static final int |
fracZ |
3146117 |
static final int |
frame |
4116 |
static final int |
frank |
134746133 |
public static final int |
front |
67108882 |
public static final int |
frontlit |
67108883 |
public static final int |
frontonly |
67108884 |
public static final int |
fullylit |
67108885 |
static final int |
function |
9670657 |
static final int |
geosurface |
528406 |
static final int |
getproperty |
9441282 |
static final int |
gotocmd |
20503 |
public static final int |
group |
1048587 |
static final int |
groupID |
3145738 |
static final int |
halo |
528408 |
static final int |
hbond |
135794713 |
static final int |
help |
20482 |
public static final int |
hetero |
168820739 |
static final int |
hidden |
34603032 |
static final int |
hide |
12293 |
static final int |
history |
134221850 |
static final int |
hover |
544771 |
public static final int |
hydrogen |
168820740 |
public static final int |
identifier |
1 |
static final int |
identify |
7340036 |
static final int |
ifcmd |
102401 |
static final int |
image |
67108985 |
static final int |
implicitStringCommand |
20480 |
public static final int |
info |
67108986 |
static final int |
initialize |
266267 |
static final int |
insertion |
1048588 |
static final int |
integer |
2 |
static final int |
invertSelected |
4124 |
static final int |
ionic |
67108886 |
public static final int |
isaromatic |
1048589 |
static final int |
isosurface |
4125 |
static final int |
javascript |
9458179 |
static final int |
jmol |
67108887 |
static final int |
join |
15729153 |
private static final int |
keyword |
9 |
static final int |
label |
150491656 |
static final int |
last |
67108888 |
static final int |
lcaocartoon |
4126 |
static final int |
left |
67108889 |
static final int |
leftbrace |
1048590 |
static final int |
leftdivide |
17825923 |
static final int |
leftparen |
17825792 |
static final int |
leftsquare |
17825824 |
static final int |
length |
7340037 |
static final int |
lines |
7340038 |
static final int |
list |
6 |
static final int |
load |
9441793 |
static final int |
loop |
528415 |
static final int |
mathExpressionCommand |
36864 |
static final int |
mathfunc |
9437184 |
static final int |
mathop |
17825792 |
static final int |
mathproperty |
7340032 |
static final int |
max |
64 |
static final int |
mep |
67108890 |
public static final int |
mesh |
67108891 |
static final int |
meshRibbon |
528416 |
static final int |
message |
20484 |
static final int |
min |
32 |
static final int |
minimize |
4129 |
static final int |
minmaxmask |
96 |
static final int |
minus |
17825904 |
static final int |
misc |
67108864 |
static final int |
mo |
4130 |
static final int |
mode |
67108892 |
public static final int |
model |
3149837 |
public static final int |
molecule |
3145742 |
static final int |
monitor |
135794723 |
static final int |
monomer |
67108893 |
static final int |
move |
4132 |
static final int |
moveto |
4133 |
static final int |
mul |
15729158 |
static final int |
nada |
0 |
static final int |
navigate |
4134 |
static final int |
next |
67108894 |
static final int |
noArgs |
262144 |
public static final int |
nodots |
67108895 |
static final int |
noeval |
131072 |
public static final int |
nofill |
67108896 |
public static final int |
nomesh |
67108897 |
static final int |
none |
1048591 |
static final int |
normal |
67108898 |
public static final int |
notfrontonly |
67108899 |
public static final int |
notriangles |
67108900 |
public static final int |
nucleic |
34603013 |
public static final int |
occupancy |
3145999 |
public static final int |
off |
1048592 |
public static final int |
on |
1048593 |
static final int |
only |
67109000 |
static final int |
opAnd |
17825856 |
static final int |
opaque |
67108901 |
public static final int |
opEQ |
17826148 |
static final int |
opGE |
17826145 |
static final int |
opGT |
17826144 |
static final int |
opLE |
17826146 |
static final int |
opLT |
17826147 |
static final int |
opNE |
17826149 |
static final int |
opNot |
17825872 |
static final int |
opOr |
17825840 |
static final int |
opToggle |
17825842 |
static final int |
opXor |
17825841 |
static final int |
orientation |
67108902 |
public static final int |
partialCharge |
3146118 |
static final int |
pause |
20485 |
static final int |
pdbheader |
67108903 |
public static final int |
percent |
17825922 |
static final int |
phi |
3145863 |
static final int |
picking |
134217732 |
static final int |
pickingStyle |
134217741 |
static final int |
plane |
9439235 |
static final int |
play |
67108904 |
static final int |
playrev |
67108905 |
static final int |
plus |
17825905 |
static final int |
pmesh |
4135 |
static final int |
point |
9439236 |
public static final int |
point3f |
7 |
public static final int |
point4f |
8 |
static final int |
pointgroup |
67109275 |
static final int |
polyhedra |
4136 |
static final int |
polymer |
67108906 |
static final int |
polymerLength |
3145744 |
static final int |
predefinedset |
34603008 |
static final int |
prev |
67108907 |
static final int |
print |
36865 |
static final int |
property |
141558028 |
static final int |
propselector |
17825953 |
public static final int |
protein |
34603014 |
static final int |
psi |
3145864 |
public static final int |
purine |
34603015 |
public static final int |
pyrimidine |
34603016 |
static final int |
quaternion |
9443333 |
static final int |
quit |
266281 |
static final int |
qw |
67108931 |
static final int |
radius |
137363473 |
static final int |
ramachandran |
1052714 |
static final int |
random |
9438209 |
static final int |
range |
67108908 |
static final int |
rasmol |
67108909 |
static final int |
refresh |
266283 |
static final int |
replace |
15729667 |
static final int |
reset |
4140 |
public static final int |
residue |
67108910 |
static final int |
resno |
3145746 |
static final int |
restore |
4141 |
static final int |
restrict |
12294 |
static final int |
resume |
67108911 |
static final int |
returncmd |
36866 |
static final int |
rewind |
67108912 |
static final int |
ribbon |
528430 |
static final int |
right |
67108913 |
static final int |
rightbrace |
1048594 |
static final int |
rightparen |
17825793 |
static final int |
rightsquare |
17825825 |
public static final int |
rna |
34603017 |
static final int |
rocket |
528431 |
static final int |
rotate |
528432 |
static final int |
rotateSelected |
4145 |
static final int |
rotation |
67108914 |
static final int |
rubberband |
67108915 |
static final int |
sasurface |
67108916 |
static final int |
save |
4146 |
static final int |
scale |
67108917 |
static final int |
scale3d |
134217739 |
static final int |
script |
9442307 |
static final int |
select |
9451009 |
public static final int |
selected |
34603018 |
static final int |
selectionHalo |
134746163 |
static final int |
semicolon |
1048595 |
static final int |
seqcode |
5 |
public static final int |
sequence |
1048596 |
static final int |
set |
36867 |
static final int |
setparam |
134217728 |
static final int |
settable |
256 |
static final int |
shape |
67108918 |
static final int |
shapely |
67108919 |
static final int |
show |
4148 |
public static final int |
sidechain |
34603020 |
static final int |
sin |
9437700 |
public static final int |
site |
3145747 |
static final int |
size |
7340039 |
static final int |
slab |
528437 |
static final int |
solid |
67108920 |
static final int |
solvent |
168820747 |
static final int |
spacefill |
528438 |
static final int |
spacegroup |
67108921 |
public static final int |
spec_alternate |
1048607 |
public static final int |
spec_atom |
1048608 |
public static final int |
spec_chain |
1048609 |
public static final int |
spec_model |
1048610 |
static final int |
spec_model2 |
1048611 |
public static final int |
spec_name_pattern |
1048612 |
public static final int |
spec_resid |
1048613 |
public static final int |
spec_seqcode |
1048614 |
public static final int |
spec_seqcode_range |
1048615 |
static final int |
specexponent |
134217736 |
public static final int |
specialposition |
34603033 |
static final int |
specpercent |
134217734 |
static final int |
specpower |
134217735 |
static final int |
specular |
134217733 |
static final int |
spin |
134746167 |
static final int |
split |
15729152 |
static final int |
sqrt |
9437702 |
static final int |
ssbond |
134746168 |
static final int |
star |
528441 |
static final int |
state |
67108922 |
static final int |
stereo |
528442 |
public static final int |
straightness |
3145865 |
static final int |
strands |
134746171 |
public static final int |
string |
4 |
public static final int |
structure |
3149845 |
static final int |
sub |
15729157 |
static final int |
subset |
34615303 |
static final int |
substructure |
9437698 |
static final int |
surface |
34603021 |
static final int |
surfacedistance |
3145866 |
public static final int |
symmetry |
34603034 |
static final int |
symop |
3145750 |
static final int |
sync |
4156 |
public static final int |
temperature |
3146123 |
static final int |
thismodel |
34603022 |
static final int |
times |
17825921 |
static final int |
top |
67108923 |
static final int |
torsion |
67108924 |
static final int |
trace |
528445 |
static final int |
transform |
67108925 |
static final int |
translate |
4158 |
static final int |
translateSelected |
4159 |
static final int |
translation |
67108926 |
public static final int |
translucent |
67108927 |
static final int |
transparent |
134217737 |
public static final int |
triangles |
67108928 |
static final int |
trim |
15729154 |
static final int |
type |
7340040 |
static final int |
unaryMinus |
17825936 |
public static final int |
unitcell |
169349184 |
static final int |
url |
67108929 |
static final int |
user |
67108930 |
public static final int |
valence |
3146008 |
public static final int |
vanderwaals |
3146007 |
static final int |
var |
134385668 |
static final int |
vector |
4161 |
static final int |
vibration |
4162 |
public static final int |
vibX |
3146124 |
public static final int |
vibXyz |
7340299 |
public static final int |
vibY |
3146125 |
public static final int |
vibZ |
3146126 |
static final int |
visible |
34603035 |
static final int |
whilecmd |
102406 |
public static final int |
wireframe |
528451 |
static final int |
within |
9439745 |
static final int |
write |
9441283 |
public static final int |
xyz |
7340297 |
static final int |
zap |
12296 |
static final int |
zoom |
4164 |
static final int |
zoomTo |
4165 |
org.jmol.viewer.org.jmol.viewer.TransformManager | ||
---|---|---|
static final int |
DEFAULT_STEREO_DEGREES |
-5 |
static final float |
degreesPerRadian |
57.295780181884766f |
static final int |
MAXIMUM_ZOOM_PERCENTAGE |
200000 |
static final int |
MAXIMUM_ZOOM_PERSPECTIVE_DEPTH |
10000 |
static final float |
radiansPerDegree |
0.01745329238474369f |
static final float |
twoPI |
6.2831854820251465f |
org.jmol.viewer.org.jmol.viewer.TransformManager11 | ||
---|---|---|
private static final int |
NAV_MODE_NEWXY |
2 |
private static final int |
NAV_MODE_NEWXYZ |
3 |
private static final int |
NAV_MODE_NEWZ |
4 |
private static final int |
NAV_MODE_NONE |
0 |
private static final int |
NAV_MODE_RESET |
1 |
private static final int |
NAV_MODE_ZOOMED |
-1 |
org.jmol.viewer.Viewer | ||
---|---|---|
public static final int |
CURSOR_CROSSHAIR |
2 |
public static final int |
CURSOR_DEFAULT |
0 |
public static final int |
CURSOR_HAND |
1 |
public static final int |
CURSOR_MOVE |
3 |
public static final int |
CURSOR_WAIT |
4 |
static final java.lang.String |
STATE_VERSION_STAMP |
"# Jmol state version " |
org.openscience.* |
---|
org.openscience.jmol.app.AtomSetChooser | ||
---|---|---|
private static final float |
AMPLITUDE_MAX |
1.0f |
private static final float |
AMPLITUDE_PRECISION |
0.009999999776482582f |
private static final float |
AMPLITUDE_VALUE |
0.5f |
static final java.lang.String |
COLLECTION |
"collection" |
static final java.lang.String |
FF |
"ff" |
private static final int |
FPS_MAX |
30 |
static final java.lang.String |
NEXT |
"next" |
static final java.lang.String |
PAUSE |
"pause" |
private static final float |
PERIOD_MAX |
1.0f |
private static final float |
PERIOD_PRECISION |
0.0010000000474974513f |
private static final float |
PERIOD_VALUE |
0.5f |
static final java.lang.String |
PLAY |
"play" |
static final java.lang.String |
PREVIOUS |
"prev" |
private static final int |
RADIUS_MAX |
19 |
private static final int |
RADIUS_VALUE |
3 |
static final java.lang.String |
REWIND |
"rewind" |
static final java.lang.String |
SAVE |
"save" |
private static final float |
SCALE_MAX |
2.0f |
private static final float |
SCALE_PRECISION |
0.009999999776482582f |
private static final float |
SCALE_VALUE |
1.0f |
static final java.lang.String |
VECTOR |
"vector" |
org.openscience.jmol.app.FileDropper | ||
---|---|---|
public static final java.lang.String |
FD_PROPERTY_FILENAME |
"filename" |
public static final java.lang.String |
FD_PROPERTY_INLINE |
"inline" |
org.openscience.jmol.app.Jmol | ||
---|---|---|
private static final java.lang.String |
aboutAction |
"about" |
private static final java.lang.String |
atomsetchooserAction |
"atomsetchooser" |
public static final java.lang.String |
chemFileProperty |
"chemFile" |
private static final java.lang.String |
closeAction |
"close" |
private static final java.lang.String |
CONSOLE_WINDOW_NAME |
"Console" |
private static final java.lang.String |
copyImageActionProperty |
"copyImage" |
private static final java.lang.String |
copyScriptActionProperty |
"copyScript" |
private static final java.lang.String |
exitAction |
"exit" |
private static final java.lang.String |
exportActionProperty |
"export" |
private static final java.lang.String |
FILE_OPEN_WINDOW_NAME |
"FileOpen" |
private static final java.lang.String |
JMOL_WINDOW_NAME |
"Jmol" |
private static final java.lang.String |
newAction |
"new" |
private static final java.lang.String |
newwinAction |
"newwin" |
private static final java.lang.String |
openAction |
"open" |
private static final java.lang.String |
openurlAction |
"openurl" |
private static final java.lang.String |
pasteClipboardActionProperty |
"pasteClipboard" |
private static final java.lang.String |
povrayActionProperty |
"povray" |
private static final java.lang.String |
printActionProperty |
"print" |
private static final java.lang.String |
recentFilesAction |
"recentFiles" |
private static final java.lang.String |
SCRIPT_WINDOW_NAME |
"ScriptWindow" |
private static final java.lang.String |
scriptAction |
"script" |
private static final java.lang.String |
toWebActionProperty |
"toweb" |
private static final java.lang.String |
uguideAction |
"uguide" |
private static final java.lang.String |
WEB_MAKER_WINDOW_NAME |
"JmolWebPageMaker" |
private static final java.lang.String |
whatsnewAction |
"whatsnew" |
private static final java.lang.String |
writeActionProperty |
"write" |
org.openscience.jmol.app.org.openscience.jmol.app.RecentFilesDialog | ||
---|---|---|
private static final int |
MAX_FILES |
10 |
org.openscience.jmol.app.Splash | ||
---|---|---|
private static final int |
BORDERSIZE |
10 |
private static final int |
STATUSSIZE |
10 |
org.openscience.jmol.app.webexport.org.openscience.jmol.app.webexport.Molecules | ||
---|---|---|
private static final int |
BallandStick |
2 |
private static final int |
FromLinks |
1 |
private static final int |
FromMenu |
2 |
private static final long |
serialVersionUID |
1L |
private static final int |
Spacefilling |
3 |
private static final int |
Wireframe |
1 |
org.openscience.jmol.app.webexport.Orbitals | ||
---|---|---|
private static final java.lang.String |
newline |
"\n" |
private static final long |
serialVersionUID |
1L |
private static final int |
SmallAtomDot |
1 |
private static final int |
Wireframe |
2 |
org.openscience.jmol.app.webexport.Test | ||
---|---|---|
private static final long |
serialVersionUID |
1L |
org.openscience.jmol.app.webexport.WebExport | ||
---|---|---|
private static final int |
IN_JMOL |
1 |
private static final int |
STAND_ALONE |
0 |
org.openscience.jmol.app.webexport.WebMaker | ||
---|---|---|
private static final java.lang.String |
WEB_MAKER_WINDOW_NAME |
"JmolWebPageMaker" |
|
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