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RDKit
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M
MACCSkeys
(in
rdkit.Chem
)
message()
(in
rdkit.Chem.FragmentCatalog
)
MolFromMol2Block()
(in
rdkit.Chem.rdmolfiles
)
maccsKeys
(in
rdkit.Chem.MACCSkeys
)
message()
(in
rdkit.ML.BuildComposite
)
MolFromMol2File()
(in
rdkit.Chem.rdmolfiles
)
main()
(in
rdkit.Chem.fmcs.fmcs'
)
message()
(in
rdkit.ML.EnrichPlot
)
MolFromMolBlock()
(in
rdkit.Chem.rdmolfiles
)
make_arbitrary_smarts()
(in
rdkit.Chem.fmcs.fmcs'
)
message()
(in
rdkit.ML.GrowComposite
)
MolFromMolFile()
(in
rdkit.Chem.rdmolfiles
)
make_canonical_smarts()
(in
rdkit.Chem.fmcs.fmcs'
)
message()
(in
rdkit.ML.ScreenComposite
)
MolFromPDBBlock()
(in
rdkit.Chem.rdmolfiles
)
make_complete_sdf()
(in
rdkit.Chem.fmcs.fmcs'
)
metalNames
(in
rdkit.Chem.PeriodicTable'
)
MolFromPDBFile()
(in
rdkit.Chem.rdmolfiles
)
make_fragment_sdf()
(in
rdkit.Chem.fmcs.fmcs'
)
metalNumList
(in
rdkit.Chem.PeriodicTable'
)
MolFromQuerySLN()
(in
rdkit.Chem.rdSLNParse
)
make_fragment_smiles()
(in
rdkit.Chem.fmcs.fmcs'
)
metalRanges
(in
rdkit.Chem.PeriodicTable'
)
MolFromSequence()
(in
rdkit.Chem.rdmolfiles
)
make_structure_format()
(in
rdkit.Chem.fmcs.fmcs'
)
metals
(in
rdkit.VLib.NodeLib.demo
)
MolFromSLN()
(in
rdkit.Chem.rdSLNParse
)
makeClassificationModel()
(in
rdkit.ML.KNN.CrossValidate
)
methods
(in
rdkit.ML.Cluster.Murtagh
)
MolFromSmarts()
(in
rdkit.Chem.rdmolfiles
)
makeDummiesQueries
(in
AdjustQueryParameters
)
methods
(in
rdkit.ML.Cluster.Resemblance
)
MolFromSmiles()
(in
rdkit.Chem.rdmolfiles
)
MakeHistogram()
(in
Composite
)
methods
(in
rdkit.ML.Cluster.Standardize
)
MolFromTPLBlock()
(in
rdkit.Chem.rdmolfiles
)
MakeHistogram()
(in
Forest
)
Metric
(in
rdkit.DataManip
)
MolFromTPLFile()
(in
rdkit.Chem.rdmolfiles
)
makeNBClassificationModel()
(in
rdkit.ML.NaiveBayes.CrossValidate
)
MIN()
(in
CompoundDescriptorCalculator
)
MolIdentifierException
(in
rdkit.Chem.MolKey.MolKey
)
MakePicks()
(in
GenericPicker
)
MIN()
(in
rdkit.ML.Descriptors.Parser
)
MolKey
(in
rdkit.Chem
)
MakePicks()
(in
SpreadPicker
)
MinAbsEStateIndex()
(in
rdkit.Chem.EState.EState
)
MolKey
(in
rdkit.Chem.MolKey
)
MakePicks()
(in
TopNOverallPicker
)
MinAbsPartialCharge()
(in
rdkit.Chem.Descriptors
)
MolKeyResult
(in
rdkit.Chem.MolKey.MolKey
)
MakePlot()
(in
rdkit.ML.EnrichPlot
)
minCircRad
(in
VisOpts
)
MolList
(in
rdkit.Chem.rdfiltercatalog
)
MakePredPlot()
(in
rdkit.ML.ScreenComposite
)
minCircRad
(in
VisOpts
)
MolLogP()
(in
rdkit.Chem.Crippen
)
makeRegressionModel()
(in
rdkit.ML.KNN.CrossValidate
)
MinEStateIndex()
(in
rdkit.Chem.EState.EState
)
MolMR()
(in
rdkit.Chem.Crippen
)
MakeScaffoldGeneric()
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
Minimize()
(in
ForceField
)
molpkl
(in
Compound
)
map_indexing_suite_IntStringMap_entry
(in
rdkit.Chem.Draw.rdMolDraw2D
)
MinPartialCharge()
(in
rdkit.Chem.Descriptors
)
molRepresentation
(in
rdkit.Chem.PandasTools
)
MapToClusterFP()
(in
BitClusterer
)
minPath
(in
RunDetails
)
mols
(in
rdkit.VLib.NodeLib.demo
)
MapToClusterScores()
(in
BitClusterer
)
minPath
(in
LayeredOptions
)
MolSimilarity
(in
rdkit.Chem.Fingerprints
)
mark()
(in
Timer
)
MinRingSizeEqualsQueryAtom()
(in
rdkit.Chem.rdqueries
)
molSize
(in
rdkit.Chem.Draw.IPythonConsole
)
MassEqualsQueryAtom()
(in
rdkit.Chem.rdqueries
)
MinRingSizeGreaterQueryAtom()
(in
rdkit.Chem.rdqueries
)
molSize
(in
rdkit.Chem.PandasTools
)
MassGreaterQueryAtom()
(in
rdkit.Chem.rdqueries
)
MinRingSizeLessQueryAtom()
(in
rdkit.Chem.rdqueries
)
molSize_3d
(in
rdkit.Chem.Draw.IPythonConsole
)
MassLessQueryAtom()
(in
rdkit.Chem.rdqueries
)
ML
(in rdkit)
MolsToGridImage()
(in
rdkit.Chem.Draw
)
MATCH()
(in
rdkit.Chem.fmcs.fmcs'
)
MLData
(in
rdkit.ML.Data
)
MolsToImage()
(in
rdkit.Chem.Draw
)
Match()
(in
Atom
)
MLDataSet
(in
rdkit.ML.Data.MLData
)
MolSupplier
(in
rdkit.Chem.Suppliers
)
Match()
(in
Bond
)
MLQuantDataSet
(in
rdkit.ML.Data.MLData
)
MolSupplier
(in
rdkit.Chem.Suppliers.MolSupplier
)
Matcher
(in
rdkit.Chem.Pharm2D
)
MLUtils
(in
rdkit.ML
)
MolSurf
(in
rdkit.Chem
)
MatchError
(in
rdkit.Chem.Pharm2D.Matcher
)
MMFFAddAngleConstraint()
(in
ForceField
)
MolToFASTA()
(in
rdkit.Chem.rdmolfiles
)
Matches()
(in
O3A
)
MMFFAddDistanceConstraint()
(in
ForceField
)
MolToFile()
(in
rdkit.Chem.Draw
)
MatchFeatsToMol()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
MMFFAddPositionConstraint()
(in
ForceField
)
MolToHELM()
(in
rdkit.Chem.rdmolfiles
)
MatchPharmacophore()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
MMFFAddTorsionConstraint()
(in
ForceField
)
MolToImage()
(in
rdkit.Chem.Draw
)
MatchPharmacophoreToMol()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
MMFFGetMoleculeForceField()
(in
rdkit.Chem.rdForceFieldHelpers
)
MolToImageFile()
(in
rdkit.Chem.Draw
)
MatchTypeVect
(in
rdkit.Chem.rdfiltercatalog
)
MMFFGetMoleculeProperties()
(in
rdkit.Chem.rdForceFieldHelpers
)
MolToInchi()
(in
rdkit.Chem.inchi
)
matchValences
(in
Default
)
MMFFHasAllMoleculeParams()
(in
rdkit.Chem.rdForceFieldHelpers
)
MolToInchi()
(in
rdkit.Chem.rdinchi
)
MatOps
(in
rdkit.ML
)
MMFFMolProperties
(in
rdkit.ForceField.rdForceField
)
MolToInchiAndAuxInfo()
(in
rdkit.Chem.inchi
)
MAX()
(in
CompoundDescriptorCalculator
)
MMFFOptimizeMolecule()
(in
rdkit.Chem.rdForceFieldHelpers
)
MolToMolBlock()
(in
rdkit.Chem.rdmolfiles
)
MAX()
(in
rdkit.ML.Descriptors.Parser
)
MMFFOptimizeMoleculeConfs()
(in
rdkit.Chem.rdForceFieldHelpers
)
MolToMolFile()
(in
rdkit.Chem.rdmolfiles
)
MaxAbsEStateIndex()
(in
rdkit.Chem.EState.EState
)
MMFFSanitizeMolecule()
(in
rdkit.Chem.rdForceFieldHelpers
)
MolToMPL()
(in
rdkit.Chem.Draw
)
MaxAbsPartialCharge()
(in
rdkit.Chem.Descriptors
)
mobile1
(in
rdkit.Chem.MolKey.InchiInfo
)
MolToPDBBlock()
(in
rdkit.Chem.rdmolfiles
)
maxCircRad
(in
VisOpts
)
mobile2
(in
rdkit.Chem.MolKey.InchiInfo
)
MolToPDBFile()
(in
rdkit.Chem.rdmolfiles
)
maxCircRad
(in
VisOpts
)
mobile_h_atoms_re
(in
rdkit.Chem.MolKey.InchiInfo
)
MolToQPixmap()
(in
rdkit.Chem.Draw
)
MaxCount()
(in
rdkit.ML.DecTree.PruneTree
)
mobile_h_group_re
(in
rdkit.Chem.MolKey.InchiInfo
)
MolToSequence()
(in
rdkit.Chem.rdmolfiles
)
MaxEStateIndex()
(in
rdkit.Chem.EState.EState
)
ModelPackage
(in
rdkit.ML
)
MolToSmarts()
(in
rdkit.Chem.rdmolfiles
)
maximize
(in
Default
)
ModelPackage
(in
rdkit.ML.ModelPackage.Packager
)
MolToSmiles()
(in
rdkit.Chem.rdmolfiles
)
MaxMinPicker
(in
rdkit.SimDivFilters.rdSimDivPickers
)
modified_query_fps
(in
rdkit.Chem.Fraggle.FraggleSim
)
MolToSVG()
(in
rdkit.Chem.rdmolops
)
MaxPartialCharge()
(in
rdkit.Chem.Descriptors
)
mol
(in
RecapHierarchyNode
)
MolToTPLBlock()
(in
rdkit.Chem.rdmolfiles
)
maxPath
(in
RunDetails
)
Mol
(in
rdkit.Chem.rdchem
)
MolToTPLFile()
(in
rdkit.Chem.rdmolfiles
)
maxPath
(in
LayeredOptions
)
MOL_KEY_VERSION
(in
rdkit.Chem.MolKey.MolKey
)
molViewer
(in
RDConfig
)
McConnaugheySimilarity()
(in
rdkit.DataStructs.cDataStructs
)
MolAddRecursiveQueries()
(in
rdkit.Chem.rdmolops
)
MolViewer
(in
rdkit.Chem.DSViewer
)
MCFF_GetFeaturesForMol()
(in
rdkit.Chem.ChemicalFeatures
)
MolCatalog
(in
rdkit.Chem
)
MolViewer
(in
rdkit.Chem.PyMol
)
MCQUITTY
(in
rdkit.ML.Cluster.Murtagh
)
MolCatalog
(in
rdkit.Chem.rdMolCatalog
)
MolWt()
(in
rdkit.Chem.Descriptors
)
MCQUITTY
(in
rdkit.SimDivFilters
)
MolCatalogEntry
(in
rdkit.Chem.rdMolCatalog
)
MorganFP
(in
FingerprintType
)
MCQUITTY
(in
ClusterMethod
)
MolChemicalFeature
(in
rdkit.Chem.rdMolChemicalFeatures
)
MoveDummyNeighborsToBeginning()
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
MCQUITTY
(in
rdkit.SimDivFilters.rdSimDivPickers
)
MolChemicalFeatureFactory
(in
rdkit.Chem.rdMolChemicalFeatures
)
mplCanvas
(in
rdkit.Chem.Draw
)
MCS
(in
rdkit.Chem
)
MolDb
(in
rdkit.Chem
)
MQNs_()
(in
rdkit.Chem.rdMolDescriptors
)
MCSResult
(in
rdkit.Chem.MCS
)
MolDraw2D
(in
rdkit.Chem.Draw.rdMolDraw2D
)
mrBins
(in
rdkit.Chem.MolSurf
)
MCSResult
(in
rdkit.Chem.fmcs.fmcs'
)
MolDraw2DCairo
(in
rdkit.Chem.Draw.rdMolDraw2D
)
multipleBondOffset
(in
MolDrawOptions
)
MCSResult
(in
rdkit.Chem.rdFMCS
)
MolDraw2DSVG
(in
rdkit.Chem.Draw.rdMolDraw2D
)
MurckoDecompose()
(in
rdkit.Chem.rdmolops
)
MEAN()
(in
CompoundDescriptorCalculator
)
MolDrawing
(in
rdkit.Chem.Draw.MolDrawing'
)
murckoPatts
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
MEAN()
(in
rdkit.ML.Descriptors.Parser
)
MolDrawing'
(in
rdkit.Chem.Draw
)
murckoQ
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
MeanAndDev()
(in
rdkit.ML.Data.Stats
)
MolDrawOptions
(in
rdkit.Chem.Draw.rdMolDraw2D
)
MurckoScaffold
(in
rdkit.Chem.Scaffolds
)
medGridToleranceMult
(in
SubshapeAligner
)
MolecularDescriptorCalculator
(in
rdkit.ML.Descriptors.MoleculeDescriptors
)
MurckoScaffoldSmiles()
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
MergeFeatPoints()
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
MoleculeDescriptors
(in
rdkit.ML.Descriptors
)
MurckoScaffoldSmilesFromSmiles()
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
MergeMethod
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
molFeatures
(in
SkeletonPoint
)
murckoTransforms
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
MergeMetric
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
MolFragmentToSmiles()
(in
rdkit.Chem.rdmolfiles
)
Murtagh
(in
rdkit.ML.Cluster
)
MergeQueryHs()
(in
rdkit.Chem.rdmolops
)
MolFromFASTA()
(in
rdkit.Chem.rdmolfiles
)
MurtaghCluster()
(in
rdkit.ML.Cluster.Clustering
)
message()
(in
rdkit.Chem.BuildFragmentCatalog
)
MolFromHELM()
(in
rdkit.Chem.rdmolfiles
)
MurtaghDistCluster()
(in
rdkit.ML.Cluster.Clustering
)
message()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
MolFromInchi()
(in
rdkit.Chem.inchi
)
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RDKit
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